Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2424 ATGAAGGAATCATCGGAAGCGGACCCTATCGCTGATTCCCTCAACCTTTTGTGTACCCTCCTGGACTCGGAACTCCCGAGCGTGAGAAACTTCAAAGGCAAGTGGTCACTCGCCCGAGTCAAACTCACCAACCTCCAAACCCACCTCACCGATTTCTCCGCCGAGTTTCCCAACGCCTCGACCTCGAACCCCCTCTCCGGCCACCTCCTCCACTCCATCTCCCACACCCTCCACGACGTCGTTTCGCTCGCCCAAACATGCCAAGCCCCGGACCTCCCCAACGGCAAGCTCAAAACCCAAAGCGACCTCGACTCCCTCCTCGCCACCCTCGACCGCCACGTCACCGACTGCGACATCCTCTTCCGCAGCGGCCTCCTCCTCGAAAACGCCGCCGTTTCGACCTCCTCCAAAAGAGAAGCCGTCCGCTCCGCCTCCCGAAACCTAATCACCCGCCTCCAAATCGGGTCGCCCGAGTCCAAGGCCTCCGCAATGGACTCCCTATTGGGCCTCCTCCACGAAGACGACAAAAACGTGACAATCGCCGTGGCCCAGGGAGTGGTCCCCGTGCTCGTGCGCCTACTCGATTCCCCCTCCGACACGAAGGAAAAAACCGTCGCCGCCATTTCCAAAGTCTCCACCGTCGAAAGCGCCAGAAACGTTCTCCTCGCCGAGGGCTTGCTTCTCCTGAACCACTTGCTTAGGGTTCTCGACTCCGGAAGCGCGTTCGCCATAGAGAAGGCCTGCGTCGCGCTTCGGGCCCTGAGCTTAACGAAGGACAACGCTCGGGCGATTGGCTCCCGCGGCGGAATCGCGTCGCTGCTGGAGATTTGCCAGGCCGGCACCCCCGGCGCGCAGGCCTCCGCCGCCGCGGTGCTGCGGAACCTCGCCGCGTTTGCTGAAATCAGAGACAATCTCGCGGAGGAGGGCGCGGTGGTGGTTCTGATCGGGGTGGCTTCCTCCGGAACCGCGTCGGCGCGGGAGAACGCGGTTGGGTGTTTGTCGAATCTGGTTTCCGAGGAAGAAGGCTTGAGGGTGTCGGTGGTGAAGGAAGGTGGGATTGAGTGTTTGAAGAATTACTGGGACTCGGGTGCGCCGGCTCCGTGCCTCGAAGCTGCGGTGGAGATGTTGCGACATTTGGCTGGGAGCGGCGCGATCGGCGAGGTTCTCGTTGGGGAAGGGTTTGTTCAGAGGGTGGTGGGGGTTCTGAGTTGTGAGGTTTTGGCGGTGAGAATATCAGCGGCGAGAGCGGTTTATGCGTTGGGGTTGAACAGCGGGAAGGCGCGGAAGGAGATGGGGGAGTCGGGGTGCGTTGTGGGGTTGATTAAGATGTTGGATGGGAAGGGTGTGGAGGAGAAGGAGGCTTCCGCGATGGCATTGTCGGTGCTGCTGATGCACCCAGGGAATCGGAGGGTTTTCCGCAAGGACGAGAGGGGGGTTGTCAGCGCGGTTCATTTGCTGAACCCTTCGGTTCAGGGGCTGGACAAGACGTACCCTGTTTCGTTGCTCGCTTTGCTCGTGCATTCCAAGAGTTGCAGGAAGCACATGGTGGCGGCGGGGGCGTGTGTATATACGCAGAAGCTCGTGGAGATGGATGTGCCCGGGGCAAAGAAACTCTTGGAGAGCCTCGGGCGTGGTAAGATTTGGGGTGTTTTTGCTAGACCCTAG 1665 0.6072 MKESSEADPIADSLNLLCTLLDSELPSVRNFKGKWSLARVKLTNLQTHLTDFSAEFPNASTSNPLSGHLLHSISHTLHDVVSLAQTCQAPDLPNGKLKTQSDLDSLLATLDRHVTDCDILFRSGLLLENAAVSTSSKREAVRSASRNLITRLQIGSPESKASAMDSLLGLLHEDDKNVTIAVAQGVVPVLVRLLDSPSDTKEKTVAAISKVSTVESARNVLLAEGLLLLNHLLRVLDSGSAFAIEKACVALRALSLTKDNARAIGSRGGIASLLEICQAGTPGAQASAAAVLRNLAAFAEIRDNLAEEGAVVVLIGVASSGTASARENAVGCLSNLVSEEEGLRVSVVKEGGIECLKNYWDSGAPAPCLEAAVEMLRHLAGSGAIGEVLVGEGFVQRVVGVLSCEVLAVRISAARAVYALGLNSGKARKEMGESGCVVGLIKMLDGKGVEEKEASAMALSVLLMHPGNRRVFRKDERGVVSAVHLLNPSVQGLDKTYPVSLLALLVHSKSCRKHMVAAGACVYTQKLVEMDVPGAKKLLESLGRGKIWGVFARP 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2424 554 Gene3D - 133 363 IPR011989 -
Ssu1g2424 554 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 15 554 - -
Ssu1g2424 554 SUPERFAMILY ARM repeat 147 493 IPR016024 -
Ssu1g2424 554 Gene3D - 364 531 IPR011989 -
Ssu1g2424 554 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 185 226 IPR000225 GO:0005515
Ssu1g2424 554 PANTHER BNAC03G16340D PROTEIN 15 554 - -
Ssu1g2424 554 SMART arm_5 339 381 IPR000225 GO:0005515
Ssu1g2424 554 SMART arm_5 257 297 IPR000225 GO:0005515
Ssu1g2424 554 SMART arm_5 298 338 IPR000225 GO:0005515
Ssu1g2424 554 SMART arm_5 174 213 IPR000225 GO:0005515
Ssu1g2424 554 SMART arm_5 423 464 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2424 Ssu-Chr1 67543396 67545060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2424 226 459 U-box Gene Family AT2G23140 28.571 6.96e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2424 - - pvu:PHAVU_009G163700g 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2424 1 67543396 67545060 Ssu1g2424 1 67543396 67545060 ECH