Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2421 ATGGGTTGCGTGCTCGGGACGCCGGCGGGAGCCGGAGATCATCGCCGTCGCCGGAGCGAGCGGCATGACGTTGCTTCCGGCGAAGGTAATAATGCCGTTAGGGTTCGAGAGAGGGCGAGGAACCGGCACACCGGCGATTTTCCGGGGACTCTTCCGGCGCCGGAGCGCCGGAAACCTAGGCTCGATCCGTGCGCCGTGACTCAGCAGGGATGGCCGTCGTGGCTGATGGCCGTCGCCGGCGAAGCGATCGGTGATTGGACTCCTCGTCGCGCAAACACGTTCGAGAAGCTGGCAAAGATTGGGCAAGGGACGTATAGTAATGTGTATAAGGCTAAGGACCTTGTTACGGGGAAGATTGTGGCTTTGAAGAAAGTGAGATTTGATAATTTGGAGCCAGAGAGTGTGAAGTTCATGGCGAGAGAGATAGTTGTTTTGAGGAGGCTTGATCACCCCAATGTTTTGAAGCTTGAGGGTTTGGTTACTTCTAGAATGTCGTGCAGTCTTTATTTGGTGTTTGAGTATATGGAGCATGATCTTGCAGGGCTTGCGGCTGGCCAAGGTGTTAAGTTCACTGAACCTCAGTTCTTTACCACGGAGCCCTATGCCTGTGAACCATCGAGTTTGCCGAAGTATCCTCCCAGCAAAGAATTGGATGTAAAACTGAgagatgaagaagcaagaagGCAAAAGGCTCTAAATGGAAAAGCTAGTGCAGTTGATGGGGCCAAAAAAGTCAGAGCACGAGAGCGGGGTCGCGCCGTTCCGGCCCCTGAAGCCAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTTGTGACCCATGCAAACGCAAAAAGCAAGAGTGAGAAATTTCCACCTCCTCATCAAGATGGTGCTGTTGGATATCCACAGGATGCATCAAATAAAGGACCTGTTTCATTTGGCGCCCCCGACACTACTTTTTCTTCAGGgatatttaattcaaaaccTTCTGGACCTGTTAGAAGTCATGGTGCCGCAGAACATTATAGAgggagaaaaactaaaaaagaagagTCCCAGATGGCATCATCATGGAAATTCATGCGTCCATTCAAGCCATCAACAGTTGGACTTTCGATGGATTTATTATTCAGGAGCAAATAA 1128 0.484 MGCVLGTPAGAGDHRRRRSERHDVASGEGNNAVRVRERARNRHTGDFPGTLPAPERRKPRLDPCAVTQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKAKDLVTGKIVALKKVRFDNLEPESVKFMAREIVVLRRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQKALNGKASAVDGAKKVRARERGRAVPAPEANAEIQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPQDASNKGPVSFGAPDTTFSSGIFNSKPSGPVRSHGAAEHYRGRKTKKEESQMASSWKFMRPFKPSTVGLSMDLLFRSK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2421 375 ProSiteProfiles Protein kinase domain profile. 94 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2421 375 MobiDBLite consensus disorder prediction 307 324 - -
Ssu1g2421 375 Pfam Protein kinase domain 94 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2421 375 MobiDBLite consensus disorder prediction 11 44 - -
Ssu1g2421 375 SUPERFAMILY Protein kinase-like (PK-like) 88 195 IPR011009 -
Ssu1g2421 375 MobiDBLite consensus disorder prediction 275 349 - -
Ssu1g2421 375 MobiDBLite consensus disorder prediction 333 349 - -
Ssu1g2421 375 Gene3D Phosphorylase Kinase; domain 1 81 176 - -
Ssu1g2421 375 MobiDBLite consensus disorder prediction 236 258 - -
Ssu1g2421 375 PANTHER CELL DIVISION PROTEIN KINASE 66 194 - -
Ssu1g2421 375 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Ssu1g2421 375 SMART serkin_6 94 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2421 375 MobiDBLite consensus disorder prediction 1 59 - -
Ssu1g2421 375 PANTHER CELL DIVISION PROTEIN KINASE 195 356 - -
Ssu1g2421 375 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 66 194 - -
Ssu1g2421 375 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 195 356 - -
Ssu1g2421 375 MobiDBLite consensus disorder prediction 241 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2421 Ssu-Chr1 67494374 67498266 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2421 86 195 Core Cell Cycle Gene Families AT5G10270 46.400 2.23e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Ssu1g2421 Pkinase 5.3e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2421 K08819 - gmx:100793033 359.762