Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2416 ATGTGCCCGTCATCAACCTTTCCTTTGAGTAGGTCAAAAATCCAATTAAGTTTGAAGAGAAGACTTGAGCAAATGGAAAggctaaattttattaaaaacggAGTGAGTAGATTGCCTCCCGGTTTTCGTTTCCAGCCAACAGATGAAGAGCTTGTGTTTCAGTACTTGAAATGTAAGATCTTCTCGTGCCAGCTGCCTGCTTCAATCATTCCTGAGATCAATGTCAGCAAGTATGATCCTTGGGATTTGCCAGGAAATTGTGACCAGCAAGAGAGGTACTTTTTCAGCTGCAAGGAAGCCAAGTATCGAAACGGCAATCGCATGAACCGAGCAACTAACTCTGGCTATTGGAAGGCAACTGGATcagacaaaaaaatttcatcatcaATAAGTAATGATACTGCGGGGCTAAGAAAGACTCTGGTATTTTATGAAGGGAAATCTCCAAATGGGTCTCGAACCGATTGGGTCATGCATGAGTATCGACTCGTCAGCTTAGAAACTACTGCTTCCAATTCATCCCAgAATTACGTAAACGAGATAGGGGATTGGGTTCTTTGTCGCATATCCATGAAGAAAAGAAGTATAGAAAGTGGTGACAACACCACAGCTCCCATGAAGAACAATGCTGTGAGGAATAATGTTCAGGTGGCTCAGCCAAGATTCTTCGATTTTTTGAGGGTTCACAATTCAGCTCCGGCTCCTAAACATTCTTCTACATCCTCATCTTGTTCAAGCTCCAATAACGTTGTAGAGGTCTCTTCACCTGACCACGAAGAAACAAGCGGCTTTGCTGATTTTTAA 804 0.408 MCPSSTFPLSRSKIQLSLKRRLEQMERLNFIKNGVSRLPPGFRFQPTDEELVFQYLKCKIFSCQLPASIIPEINVSKYDPWDLPGNCDQQERYFFSCKEAKYRNGNRMNRATNSGYWKATGSDKKISSSISNDTAGLRKTLVFYEGKSPNGSRTDWVMHEYRLVSLETTASNSSQNYVNEIGDWVLCRISMKKRSIESGDNTTAPMKNNAVRNNVQVAQPRFFDFLRVHNSAPAPKHSSTSSSCSSSNNVVEVSSPDHEETSGFADF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2416 267 Pfam No apical meristem (NAM) protein 39 163 IPR003441 GO:0003677|GO:0006355
Ssu1g2416 267 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 25 267 - -
Ssu1g2416 267 MobiDBLite consensus disorder prediction 232 267 - -
Ssu1g2416 267 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 25 267 - -
Ssu1g2416 267 MobiDBLite consensus disorder prediction 233 256 - -
Ssu1g2416 267 Gene3D NAC domain 47 197 IPR036093 GO:0003677|GO:0006355
Ssu1g2416 267 SUPERFAMILY NAC domain 34 192 IPR036093 GO:0003677|GO:0006355
Ssu1g2416 267 ProSiteProfiles NAC domain profile. 38 192 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2416 Ssu-Chr1 67430494 67431944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2416 25 227 NAC Transcription Factor Family AT5G13180 53.670 3.51e-74 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu1g2416 NAM 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2416 - - aprc:113868555 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2416 1 67430494 67431944 Ssu5g2984 5 76788747 76790687 ECH
Ssu3g0008 3 177914 178913 Ssu1g2416 1 67430494 67431944 ECH
Ssu1g2416 1 67430494 67431944 Ssu1g2416 1 67430494 67431944 ECH