Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2409 ATGGGCCTTGCAAAGAGAAAGTGCAAGCAAAACATGATTCTCAAGGCGTGGGAGCGTTGCCGATTCTTAAGGCCACACTTGAAATTAAAAGCTACATCAAAATCATTGTCAGAGAATGATCACGAGAAGGGTCAAATAGCACCTCATGGTTGTTTTTCAGTGCATGTTGGACCAGGGAGACAAAGGTTCGTTGTGAAGACCAAGTACGTTAACCACCCACTATTCATGATGCTGCTAGAAGAGGCAGAACAGGAATATGGGTTCGAAAGTGATGGCCCTATTTGGCTTCCTTGCAACGTCGATTTGTTCTACAAAGTGTTGGCTGAGATGGATGGCGAAGAGAATAATATCATTATCCACGGTACTCGAAGAAACTTTACCATGGCTAAGGTTTTTCCTTTCGTTCTTCGTAGCCCAGCACCTCTTCTTTGTTACATGAACAAAAATCACAGTGCATACAGCGTTATGGACTCCAAATTGCTGAGAATGAACTGA 495 0.4323 MGLAKRKCKQNMILKAWERCRFLRPHLKLKATSKSLSENDHEKGQIAPHGCFSVHVGPGRQRFVVKTKYVNHPLFMMLLEEAEQEYGFESDGPIWLPCNVDLFYKVLAEMDGEENNIIIHGTRRNFTMAKVFPFVLRSPAPLLCYMNKNHSAYSVMDSKLLRMN 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2409 164 Pfam Auxin responsive protein 33 108 IPR003676 GO:0009733
Ssu1g2409 164 PANTHER SMALL AUXIN-UP RNA-RELATED 9 151 - -
Ssu1g2409 164 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 9 151 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2409 Ssu-Chr1 67247526 67248020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2409 48 108 Calmodulin-binding Proteins AT4G34750 49.180 5.65e-17 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2409 K14488 - gmx:100793967 252.677