Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2408 ATGTTCTATCAGATCcttattcatttttctctccTCACCACTTCCCGTGCTAAAGATTATTCAGGTTCTTACGTGATGGCGAATAGCATTGACCTTAATGTAAAGCAAGGAGAACCAACCCGAGTTCAGCCTGCAGAGGAAACAGAAAAGGGACCCTACTTCCTTTCAAACCTGGACCAGAACATTGCTGTTCCAGTGCGCACGGTTTATTGCTTTAAATCTGCTTCTAGAGGAAACGAGGATGCTGCACGAGTTATCAAGGATGCATTGTCGAAGATTCTTGTGCCTTATTACCCCATGGCAGGCACGTTGATTATAAGCTCGGAAGGGAAGTTGATAGTGGATAACCCAGGGGAGGGTGCGGTGTTTGTTGAGGCTGAAGCGAATTGTAACATAGAAGAGATTAGGGACCTGGCAAAGCCACACCCTGATACTCTTGGGAAACTGGTTTACAACGTCCCTGGCGCTCGAAACATTCTTGAGATGCCACTTATGACTGTTCAGGTGACAAGGTTCAAATGCGGAGGATTTACTTTGGGGCTATGCATGAACCACTGCATGAAAGACGGACTATGTGCCATGGAGTTTGTGAATGCATGGAGTGAGACAGCCCGAGGTTTGGACTTAAAGATTCCACCGTTTCTTAATCGAACCATAATCAAAGCACGTAACCCTCCCAAGATAGAGTTCCAACATAACGAATTTGAGGAAATAAAAGATGTATCAAACACTAAAAAACTttatgaagaagaaaatatgcTCTACAGATCCTTCTTCTTCGATCCTGAGAAGCTTGACCTGCTTAAGAAGAAGGCCACTGAAGACGGGGTTTTGAAAAAGTGCTCCACTTTTGAAGCCCTCTCAGGTTTTGTATGGAGAGCTCGAACTGCGGCATTAAGCATGCAACCTGATCAACAAACGAAGCTTCTCTTTGCGGTTGATGGAAGGTCAAGATTTGTGCCCCCAATACCAGAAGGGTACTTTGGCAATGCTATTGTGTTGACAAATTCCCTATGTAAGGCAGGGGAGCTATTGAAGAACCCTTTGTCATTTTCTGTGGGATTGATTCGCAAGGCAATTGACATGGTCACAGATAGTTACATGAGATCTGCCATTGACTATTTTGAAGTCACAAGAGCCAGGCCTTCCCTAACAGCCACCCTTTTGATCACAACTTGGACTAGGTTGTCTTTCCACACCACAGATTTCGGCTGGGGAGAACCTCTTTGTTCTGGCCCTGTGACCCTGCCAGAGAAAGAAGTCATTTTGTTCTTGTCACACGGTCAAGAAAGGAAAAGCATAAATGTTCTTCTGGGTTTGCCTAGTTCTGCCATGGAAATTTTTGAAGTGTTGATGATGCAGGTGTGA 1368 0.4379 MFYQILIHFSLLTTSRAKDYSGSYVMANSIDLNVKQGEPTRVQPAEETEKGPYFLSNLDQNIAVPVRTVYCFKSASRGNEDAARVIKDALSKILVPYYPMAGTLIISSEGKLIVDNPGEGAVFVEAEANCNIEEIRDLAKPHPDTLGKLVYNVPGARNILEMPLMTVQVTRFKCGGFTLGLCMNHCMKDGLCAMEFVNAWSETARGLDLKIPPFLNRTIIKARNPPKIEFQHNEFEEIKDVSNTKKLYEEENMLYRSFFFDPEKLDLLKKKATEDGVLKKCSTFEALSGFVWRARTAALSMQPDQQTKLLFAVDGRSRFVPPIPEGYFGNAIVLTNSLCKAGELLKNPLSFSVGLIRKAIDMVTDSYMRSAIDYFEVTRARPSLTATLLITTWTRLSFHTTDFGWGEPLCSGPVTLPEKEVILFLSHGQERKSINVLLGLPSSAMEIFEVLMMQV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2408 455 Gene3D - 28 235 IPR023213 -
Ssu1g2408 455 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 33 453 - -
Ssu1g2408 455 Pfam Transferase family 37 449 - -
Ssu1g2408 455 Gene3D - 236 454 IPR023213 -
Ssu1g2408 455 PANTHER OMEGA-HYDROXYPALMITATE O-FERULOYL TRANSFERASE 33 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2408 Ssu-Chr1 67205747 67209905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2408 30 455 Monolignol Biosynthesis Gene Families AT5G48930 36.425 4.41e-91 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2408 K15400 - gmx:100794490 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2408 1 67205747 67209905 Ssu1g2408 1 67205747 67209905 ECH