Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2394 ATGAAGAAACACCAAGTGATACTCCCTACTGCATCTACATCATCAACTGCTTTTTCATCTGATTTTAAAGTTGCTTATAATTCTACTCTTCATGTTGAGAAAGAGGTTTTAAGAACTCAAAGGAAGGCGATATCAGCACAAAACGAAAGTGACAAAGAGATTAATCTGCACAGATATGCATTTCAAACAAGGAGTCCGGTTGATGTTCTGGACGATGGGTACCAGTGGAGGAAATATGGGAAAAAGATAGTGAAAAACAATAAGTTCCCAAGAAGTTACTACAGGTGCTCTCATCGAGGGTGCAATGTGAAGAAACAAATCCAACGCCATCCCCAAGATGAACAGATCGTGGTAACAACCTACGAAGGGACACACACACACCCTGTTGATAAGTCAGCGGAAAGCTTCGACCAGATCTTGGGAAACCTACTCTGTAATGTGCCTCCGACATTGGAATAG 459 0.4161 MKKHQVILPTASTSSTAFSSDFKVAYNSTLHVEKEVLRTQRKAISAQNESDKEINLHRYAFQTRSPVDVLDDGYQWRKYGKKIVKNNKFPRSYYRCSHRGCNVKKQIQRHPQDEQIVVTTYEGTHTHPVDKSAESFDQILGNLLCNVPPTLE 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2394 152 Gene3D WRKY domain 55 130 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g2394 152 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 1 146 - -
Ssu1g2394 152 SMART WRKY_cls 70 129 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2394 152 Pfam WRKY DNA -binding domain 71 128 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2394 152 ProSiteProfiles WRKY domain profile. 65 130 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g2394 152 SUPERFAMILY WRKY DNA-binding domain 62 129 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g2394 152 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 146 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2394 Ssu-Chr1 66703261 66704624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2394 58 143 WRKY Transcription Factor Family AT5G13080 69.767 1.42e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g2394 WRKY 3.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2394 - - gmx:100796070 256.529