Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2380 ATGGAATGTAATAAAGATGGTGCCTCAAGGGCTAAAGAACTTGCAGAGAAGATGCTTTTGCAGAAGGACCTTGGTGGGGCAAGAATGCTCGCAATGAAGGCTCTAGAATTATATCCCAATCTTGATGGCCTTCCTCAATTGCTAGCAACTATTGATGTGTATATCTCTGctgaaaaaaaagttaatggaGAAGTTGATTGGTACAGGATACTTGGTGTGCAACCCTTGGCTAATGAAGAAACAATTCGAAGACGTTATAGGAAACTGGCTCTTACTCTGCACCCTGATAAAAATAAATCCGTAGGTGCAGAGGGGGCATTTAACCTTATCTCACAGGCTTGGAGTTTATTATCTGATAAAGCCAAGAGAATCACCTatgaccaaaagtacaatttatgGGGTATATATCATGGAAATCCTTGTGGGAAACCTTCTATACCAGCTAGTCAGAAtggtttatataataatgtctTCAATCATGTGTCATTGAAACCACATTTTGGACCATTTGCAGTTTCTGCAGCACAAAGTTTGAGTACCATAATGCTTATATTAACTGCAATCTTGTCTGTACCAGCTGTCATAAgccatttttttcttctgagACATCGCCACCACCTGGATACATAA 630 0.3587 MECNKDGASRAKELAEKMLLQKDLGGARMLAMKALELYPNLDGLPQLLATIDVYISAEKKVNGEVDWYRILGVQPLANEETIRRRYRKLALTLHPDKNKSVGAEGAFNLISQAWSLLSDKAKRITYDQKYNLWGIYHGNPCGKPSIPASQNGLYNNVFNHVSLKPHFGPFAVSAAQSLSTIMLILTAILSVPAVISHFFLLRHRHHLDT 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2380 209 CDD DnaJ 66 119 IPR001623 -
Ssu1g2380 209 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Ssu1g2380 209 PRINTS DnaJ domain signature 68 86 IPR001623 -
Ssu1g2380 209 PRINTS DnaJ domain signature 102 122 IPR001623 -
Ssu1g2380 209 PRINTS DnaJ domain signature 86 101 IPR001623 -
Ssu1g2380 209 Gene3D DnaJ domain 53 135 IPR036869 -
Ssu1g2380 209 SUPERFAMILY Chaperone J-domain 63 140 IPR036869 -
Ssu1g2380 209 Pfam DnaJ domain 66 127 IPR001623 -
Ssu1g2380 209 PANTHER HEAT SHOCK PROTEIN-LIKE 1 166 - -
Ssu1g2380 209 PANTHER BNAC03G44070D PROTEIN 1 166 - -
Ssu1g2380 209 SMART dnaj_3 65 122 IPR001623 -
Ssu1g2380 209 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2380 Ssu-Chr1 66287414 66288043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2380 4 132 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.519 8.12e-25 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2380 - - gmx:100797672 281.182