Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2377 ATGGAGAACAGCCAGCAAGGGGGCCAAGCGCAATCGGGTCCGTACCCGGCGGGCGCTGGAGGTGTAGGTGCAGGTGCAGGTGCAGGCGCGCCCCCGTTCCAGCACCTGCTGCaccagcagcagcagcagctgCAGATGTTCTGGTCGTACCAGCGGCAGGAGATCGAGCACGCGAACGACTTCAAGAACCACCAGCTCCCCCTGGCCCGCATCAAGAAGATCATGAAGGCCGACGAGGACGTCCGCATGATCTCCGCCGAGGCCCCCATCCTCTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACCATCCGCTCCTGGCTCCACGCCGAGGAGAACAAGCGCCGCACCCTCCAGAAGAACGACATCGCCGCCGCCATCACCCGCACCGACATTTTCGACTTCCTCGTCGACATCGTCCCCCGCGACGAGATCAAGGACGACGCCGCCCTCGTCGGCGCCGCCGCTAGCGGCGTTCCCTACTACTACCCCCCCATTGGCCAGCCTGCCGGCATGATGATTGGCCGTCCGGCGGTCGATCCCGCCACCGGAGTCTACGTCCAGCCTCCCTCGCAGGCGTGGCAGTCCGTCTGGCAGTCCGCCGCCGAGGACGCCTCCTACGCCACCGGCGGGGCCGGGCCCCAGGGCAACCTTGATGGCCAGAGGTAG 672 0.6518 MENSQQGGQAQSGPYPAGAGGVGAGAGAGAPPFQHLLHQQQQQLQMFWSYQRQEIEHANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDAALVGAAASGVPYYYPPIGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQSAAEDASYATGGAGPQGNLDGQR 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2377 223 MobiDBLite consensus disorder prediction 1 24 - -
Ssu1g2377 223 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 222 - -
Ssu1g2377 223 SUPERFAMILY Histone-fold 40 137 IPR009072 GO:0046982
Ssu1g2377 223 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 1 222 - -
Ssu1g2377 223 Gene3D Histone, subunit A 32 143 IPR009072 GO:0046982
Ssu1g2377 223 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 65 128 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2377 Ssu-Chr1 66258023 66258694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2377 26 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 79.426 6.58e-103 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ssu1g2377 CBFD_NFYB_HMF 2.2e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2377 - - gmx:100818447 392.504