Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2361 ATGGGCCTTTGGCCGTACCAAGCTTCAAAGGATTATCTCACTGTCTATGCAGCTTTGCCAACTGCTCCATCAGATGAATACGTGAATGTGTCCAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATCTCTGGTGTTTCTGGCGAGGGATGTGGTGTTACAGTTGAGGGGTGTCTTGTTGCGGAGGCTATTGCAACTCCCCAGCTGCTGACACGAAGGCTAGCTGCTGAGGATGATGATGTGGATTTGTTTGGTGAAGAGacagaaaaagagaagaaggcaGCGAAGGAACGGGCAGCTGTGGTGAAGGCatctacaaaaaagaaagagtCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACCGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGATGGGTTGCTTTGGTGtgcatCCAAACTTGTTCCTGTTGCGTACGGTATCAAGAAAATGCAAATTAAGCTTACTATTGTGGATGACCTTGTTTCTGTCGACAATCTTATTGAGGAACATCTCACAGTTGAGCCTATCAATGACAAGTGGGATATTTGCtcttttaagaaagaaaaaaaagttgaatgtGCCTTTGCACTTCAGAGTTCCTGTATATTTTCTTCGAGCCTTGATGACAAGGTTGTTTATAGTACGAGCATTGGCATCAAGAAAGTTCTCAAATGA 708 0.4068 MGLWPYQASKDYLTVYAALPTAPSDEYVNVSRWYKHIDALLRISGVSGEGCGVTVEGCLVAEAIATPQLLTRRLAAEDDDVDLFGEETEKEKKAAKERAAVVKASTKKKESGKSSVLLDVKPWDDETDMKKLEESVRSVQMDGLLWCASKLVPVAYGIKKMQIKLTIVDDLVSVDNLIEEHLTVEPINDKWDICSFKKEKKVECAFALQSSCIFSSSLDDKVVYSTSIGIKKVLK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2361 235 Pfam EF-1 guanine nucleotide exchange domain 115 196 IPR014038 GO:0003746|GO:0006414
Ssu1g2361 235 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 77 85 IPR001326 GO:0003746|GO:0005853|GO:0006414
Ssu1g2361 235 SMART EF1_GNE_2 113 199 IPR014038 GO:0003746|GO:0006414
Ssu1g2361 235 SUPERFAMILY eEF-1beta-like 110 198 IPR036219 -
Ssu1g2361 235 CDD EF1B 111 180 IPR014038 GO:0003746|GO:0006414
Ssu1g2361 235 PANTHER ELONGATION FACTOR 1-DELTA 1-RELATED 6 199 - -
Ssu1g2361 235 Gene3D - 106 198 IPR014717 -
Ssu1g2361 235 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 6 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2361 Ssu-Chr1 66060791 66064586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2361 6 198 Eukaryotic Initiation Factors Gene Family AT2G18110 68.812 2.62e-76 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2361 K03232 - gmx:100777627 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2361 1 66060791 66064586 Ssu1g2361 1 66060791 66064586 ECH