Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2357 ATGCTTGGTGTTTCGCATTTGAGAAATAGAAGAGTCCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGACGGTGATAAAGCATTTGGTACATCTAGTGAACTCTTCATTGATGAAAGATTGAGAATTGCATTAGATGGCATTATTGTCATTAGTATGGAAATATTTCGCCCTAAAATTTTAGATAGTTTGGCTGAAAAATCCTTAAGAGGAAAGATAAGGATTACCACAAGATGCTTATGGCTTGACAAAGGGAAGCTGATGGATGCGCTCTATAAAGCTGCCCATGCAGCTATTTCAAGCTGCCCTGTAAACAGTCCACTGGCTCACATGGAAAGAACTGTGTCTGAGGTATTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGACCTGAAATTATTGCCATTGCCATAGAAAATCCTGCAACTGTTCTTGCTGAtgagataaacacaaaattgTCTGGCAAATCCCATGTGGGTCATGGAATATCAACATCAAGAAAAGCAGTGGATGGACATGGGAAGGGAAATCAGTCCACCACACTGCAAGTTAGAGATGATAGTATTGATAGTGCAAGTGAAGCTGAGGGTGATTTATCTGAGTCAGAGGATTCAGATGAATTTTGGAAACCATTCATTACATCATTACCAGTTGAGAAGTCAATTGGTGCTGACATTGGTTATGTTTCACGAAAGGAGCATAAATCCAATTTGAAGAAAGATGATTCTGAAGACATTGATGAAGCCAAGTCTGAAGAACTGTCTAATTCTGAACCCAACTCTTCAAAAtcattaaagagaaataaatggaAAACTGAGGAAGTTAAGAAGCTGATTGGTATGCGTGGGGAACTACATGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGCAGAGATATCTCAAAAATTGTTGGCTGATGGGATCAGTAGAAGTCCTGGACAGTGCAAATCTCTCTGGACATCTTTGGTACTGAAATATGagAGAATCAAGAATGAGAAGGATAGCAAGAAAAGTTGGCAATATCTTGAGGACATGGAAAGGATAATGTCTGATAAAGAAGCCCCTGCAACAAAATGA 1107 0.3821 MLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFIDERLRIALDGIIVISMEIFRPKILDSLAEKSLRGKIRITTRCLWLDKGKLMDALYKAAHAAISSCPVNSPLAHMERTVSEVLRKMVRKYSGKRPEIIAIAIENPATVLADEINTKLSGKSHVGHGISTSRKAVDGHGKGNQSTTLQVRDDSIDSASEAEGDLSESEDSDEFWKPFITSLPVEKSIGADIGYVSRKEHKSNLKKDDSEDIDEAKSEELSNSEPNSSKSLKRNKWKTEEVKKLIGMRGELHDRFQVVKGRMALWAEISQKLLADGISRSPGQCKSLWTSLVLKYERIKNEKDSKKSWQYLEDMERIMSDKEAPATK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2357 368 CDD GT1 275 340 - -
Ssu1g2357 368 ProSiteProfiles Myb-like domain profile. 269 333 IPR001005 -
Ssu1g2357 368 PANTHER RIBONUCLEASE J 1 368 - -
Ssu1g2357 368 MobiDBLite consensus disorder prediction 178 195 - -
Ssu1g2357 368 MobiDBLite consensus disorder prediction 240 274 - -
Ssu1g2357 368 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 368 - -
Ssu1g2357 368 Gene3D - 40 146 - -
Ssu1g2357 368 MobiDBLite consensus disorder prediction 240 261 - -
Ssu1g2357 368 MobiDBLite consensus disorder prediction 162 213 - -
Ssu1g2357 368 Gene3D - 277 338 - -
Ssu1g2357 368 Pfam Myb/SANT-like DNA-binding domain 274 358 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2357 Ssu-Chr1 65974222 65977074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2357 276 362 Trihelix Transcription Factor Family AT2G38250 33.708 2.74e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu1g2357 Myb_DNA-bind_4 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2357 - - gmx:100783850 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2357 1 65974222 65977074 Ssu1g2357 1 65974222 65977074 ECH
Ssu6g1484 6 24360372 24377631 Ssu1g2357 1 65974222 65977074 PCT