Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2351 ATGGGGTTTCAGGAGTTGGTTTTGCTATTCTGTTCAGCTTGGTGTGTCTTTTATGTGGGTAGTTGCAGTGCTCAGTTGCAATCCTCTCAGACCCAAGTGCTTCTCCAGTTGAAAAAGCACTTGGAGTACCCAAGACAGCTGGAAATATGGAGAGATCGTTGGACAGATCTTTGCTCTATTTCTTCTTCTGCGCAAGTGAATGTCACATGCGAGGACAATTTTGTCACCGAGCTCACCATCTTGGGTGATAAGCCAACAAAGGGTAGAGACTTTGATGGGTTTGCTATTCCAAATCAGACACTATCAGAGCTCTTTTCCATGGACTCTTTTGTGGCTACTCTAGCAAGGTTAACTAGCCTGAGAGTCCTTCGTCTTGTCTCTTTGGGCATGTGGGGACCACTCCCTGATAGAATTCACAGACTTTATTCACTTGAACATTTGGACTTGAGTTCCAATTATCTTTACGGATCAATCCCTCCAAAGATTTCCACAAAAGTGAACCTTCAAACTCTTGGATTGGGTGATAACTTCTTCAATGGCACCATCCCAACCTTGTTCAATTCATCAAGCAAGCTCACAGTTCTTAGTTTGAAGAATAACAGGTTGAAGGGTCCATTTCCACCTTCAATCCTTAGTGTCACCACTTTAACTGACATTGACATGTCAAGCAACCAAATATCGGGGAGATTGCAAGATTTTACTGGTTTGAGTGGCTTGGAACAGCTAGATTTAAGGGAAAACAAATTAGAGTCTGCACTGCCTGCAATGCCAAAAGGGTTGATAAGGCTTTTCCTCAGCAGAAACTCCTTCTCAGGTGAAATTCCCAAGCACTATGGTAAACTAAATAGGCTTCAGAAGCTTGATATTTCCTTTAATGCACTCACAGGCACTACTCCTGCTGAACTTTTTTCTTTGCCAAACATCAGTTACTTGAATTTGGCATCCAACATGTTGAATGAACCACTCCAAAGTCACCTAAGATGTAGCAGCCAACTTAGATTTATTGACATATCATACAATAGGTTAGTGGGGGGCTTGCCATCTTCACTGAGCACTGAATCAAAAGATAGAGTTGTTAAGAGTGATGGTAACTGTTTATCTGGGAATGTGAAGCATCAGCATTCAGTATCCTACTGCACAGAAGCACATGTGAAGAAGAAATCATACAGAGTTGGAATTTTTGTTGGTGTCATTGTGGGAATTCTTGTAATCATTGTGGCTTTGGCTTTGAGCATTATTCTAACTTGTAAAAGGTATTTCCCTCGGGGGATGTCAGAGCAGCACCTATTGCATAAAACAGTTCAAGATAGCTATGCAGCAGGGTTCTCCTCTGAGCTTGTCACAAATGCAAGGTATGTTTCTGAAGCTGCAAAGTTAAGCAGAGAGGACCTCCCCATGTGTCGGTCATATTCCATGGAAGAGCTAAAGGAAGCCACAAATAACTTTGACAACTCTACTTTTATGGGTGAAAATATATATGGGGAGCTTTATAGAGGAAAACTGGAGAGTGGGATACAGGTTGTAATAAGGTCCCTGCCTTTGTCAAAAAAGTATTCAATTAGGAATTTCAAGCTGAGGTTGGATTTGCTTGCAAAGCTACGTCACCCGCATTTGGTATCCCTCCTGGGGCACTGCATTGATGGTGTTGTAGGAGAGAATAAAGAGACAAATGTTTTTCTCATTTATGAATATGTGTCAAATGGGACTCTCCAGACTTATCTCTCTGGAGATAGTCCTGGCAAGGTTTTCAATTGGTCAGAGCGATTGTCAGCACTAATTAGCATTGCTAAGGCTGTCCACTTCCTACACACCGGCATGATACCTGGTTTCTTCAAAAATCGACTTAAGACCAACAATATCTTGCTGAATGAGAATTGGATGGCAAAGTTGAGTGACTATGGATTGTCCATTATATCAGAAGAAACTGACGCATGTGGGGTAAAAGGAGAAAGTCCTAACTCATGGCAAATGAAAAGGTTAGAGGATGATGTTTATAGCTTTGGATTCATACTACTCGAGGCACTTGTTGGACCTTCAGTATCAGCTAAAAGAGAAGCAATTGTGCTGAATGTAATGGTATCTTTCAATAGTCAGGATGACTGGAAACAGATTGTGGACCCAGTTGTGCAAGCTACTTGCTCTAAAGAATCTCTATTTGTTGTGATTTCCATAACAAACAAATGTGTAACTCCTGAGTCATGGAGCCGACCATCCATCGAGGATGTCCTTTGGAACCTGCAGTATGCTTCTCAAATTCAGGCAACAGCTGATGGGGATCAGAGAATTTGA 2289 0.4176 MGFQELVLLFCSAWCVFYVGSCSAQLQSSQTQVLLQLKKHLEYPRQLEIWRDRWTDLCSISSSAQVNVTCEDNFVTELTILGDKPTKGRDFDGFAIPNQTLSELFSMDSFVATLARLTSLRVLRLVSLGMWGPLPDRIHRLYSLEHLDLSSNYLYGSIPPKISTKVNLQTLGLGDNFFNGTIPTLFNSSSKLTVLSLKNNRLKGPFPPSILSVTTLTDIDMSSNQISGRLQDFTGLSGLEQLDLRENKLESALPAMPKGLIRLFLSRNSFSGEIPKHYGKLNRLQKLDISFNALTGTTPAELFSLPNISYLNLASNMLNEPLQSHLRCSSQLRFIDISYNRLVGGLPSSLSTESKDRVVKSDGNCLSGNVKHQHSVSYCTEAHVKKKSYRVGIFVGVIVGILVIIVALALSIILTCKRYFPRGMSEQHLLHKTVQDSYAAGFSSELVTNARYVSEAAKLSREDLPMCRSYSMEELKEATNNFDNSTFMGENIYGELYRGKLESGIQVVIRSLPLSKKYSIRNFKLRLDLLAKLRHPHLVSLLGHCIDGVVGENKETNVFLIYEYVSNGTLQTYLSGDSPGKVFNWSERLSALISIAKAVHFLHTGMIPGFFKNRLKTNNILLNENWMAKLSDYGLSIISEETDACGVKGESPNSWQMKRLEDDVYSFGFILLEALVGPSVSAKREAIVLNVMVSFNSQDDWKQIVDPVVQATCSKESLFVVISITNKCVTPESWSRPSIEDVLWNLQYASQIQATADGDQRI 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2351 762 SUPERFAMILY Protein kinase-like (PK-like) 465 747 IPR011009 -
Ssu1g2351 762 Pfam Protein tyrosine and serine/threonine kinase 488 743 IPR001245 GO:0004672|GO:0006468
Ssu1g2351 762 Gene3D Ribonuclease Inhibitor 27 259 IPR032675 -
Ssu1g2351 762 Gene3D Ribonuclease Inhibitor 260 394 IPR032675 -
Ssu1g2351 762 Gene3D Phosphorylase Kinase; domain 1 443 564 - -
Ssu1g2351 762 Gene3D Transferase(Phosphotransferase) domain 1 565 761 - -
Ssu1g2351 762 PANTHER OS07G0166700 PROTEIN 4 761 IPR045272 GO:0004714|GO:0006468
Ssu1g2351 762 SMART LRR_typ_2 141 165 IPR003591 -
Ssu1g2351 762 SMART LRR_typ_2 236 259 IPR003591 -
Ssu1g2351 762 SMART LRR_typ_2 281 305 IPR003591 -
Ssu1g2351 762 ProSiteProfiles Protein kinase domain profile. 482 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2351 762 SUPERFAMILY L domain-like 29 371 - -
Ssu1g2351 762 Pfam Leucine rich repeat 283 342 IPR001611 GO:0005515
Ssu1g2351 762 Pfam Leucine rich repeat 167 226 IPR001611 GO:0005515
Ssu1g2351 762 PANTHER BNAA09G06560D PROTEIN 4 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2351 Ssu-Chr1 65891059 65895211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2351 6 694 Miscellaneous Gene Families AT5G14210 51.355 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Ssu1g2351 PK_Tyr_Ser-Thr 4.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2351 - - gmx:100802978 1291.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2351 1 65891059 65895211 Ssu1g2351 1 65891059 65895211 ECH