Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2349 ATGGCCACCCAAACCCAAACACGGTCACATCCAAACACCATTATCGACCCAAACAGCGGTTTCTGTTCTCATTCCAGAACCTTCCACAGCCTCCGTCCAAACGTCCCTCTCCCTCCGCCTTCCCAGCCGCTCTCCCTCACCGACTACGCCCTCTCTCTCGTCCCCGCCGCCGCCACCGCCACTTCCGCCCTCATCGACGCCGCCACCGAACGCCACCTCTCGTACTCCCTCTTCCTCCGCCAAGTCAAATCCCTCGCCTCCTCCCTCCAATCCCTCACCCCTCTCTCCAAAGGCCACGTGGCACTAATCCTCACCCCCGCTTCCCTGCACGTCCCCGTACTCTACTTCTCCCTCTTGTCCCTCGGCGTCATAATCGCACCCGCGAACCCGCTCAGCTCCCCCTCCGAGTTGACTCACCTGGTTCGACTCACCAAACCCGCCATCGCGTTCGCCACCTCCGCCACCGCAAACAAAATTCCCAACCTGAAGTTCGGCACCATCCTCACGGATTCGCCTCTCTTCAATTCCATGCTCGAGGGCGAGGCACGAACTCGCCGAGTCGAACTGAGTCAGTCCGACTCAGCGGCGATTCTCTTCTCCTCGGGCACCACGGGGCGCGTGAAGGGCGTGTTGCTCACGCACCGGAACTTCATCGCGCTGATTGGGGGGTTTTATCACCTGAGGCGCATGGTGGTGGTGGGTGGTGCCGCCGCAGAGGATCCGCACCCGGTGTCGCTGTTCACGCTTCCGCTCTTCCACGTGTTCGGGTTCTTCATGCTGGTCAGGGCCATCGCCGTGGGGGAGACGCTGGTGCTGATGCAGAGGTTCGATTTCGAAGGGATGCTGAAGGCCGTCGAGAGGTACAAAATCACGCACATGCCGGTGTCTCCGCCGCTCGTGGTGGCGCTGGCGAAGTCGGAGCTGGTGAAGAAGTACGATCTCAGCTCGCTCCGGCTTCTGGGGAGCGGTGGCGCGCCGCTGGGGAAGGAGGTGGTCGAGGACTTCCGAGCCAGATTCCCCAACGCGGAAATTGGGCAGGGCTATGGTCTGACTGAAAGTGGAGGAGGGGCAGCTAGAATGGTGGGGCCTGATGAGGCTGAGCGCCATGCTTCTGTGGGTCGACTAGCAGAAAATATGGAGGCCAAGATAGTGGACCCTGTAACTGGAGAGGCATTACTTCCTGGCCAAAAAGGGGAACTGTGGTTGCGAGGTCCAACAATCATGAAAGGTTATGTGGGAGATGAGAAGGCAACAGTTGAAGCATTGGATTCAGAGGGATGGCTGAAGACCGGTGATCTTTGTTATTTTGACTCTGATGGTTTCCTCTACATTGTAGATAGACTGAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCTGCTGAGTTGGAACATATACTTCACACCAATCCTGAAATTGCTGATGCTGCAGTAGTTCCGTATCCTGATGAAGATGCAGGACAGATTCCAATGGCCTTTGTAGTAAGAAAACCTGGCAGCAACATCACTGCAGATCAGGTCATGGAGTTTGTGGCAAAACAGGTTTCACCATACAAGAAGATACGACGTGTTTCTTTTATCAACTCTATCCCAAAATCTCCTGCCGgcaaaattttgagaagagAATTACTTGATTATGCTCTATCTAGTGGTTCATCCAAATTGTGA 1671 0.553 MATQTQTRSHPNTIIDPNSGFCSHSRTFHSLRPNVPLPPPSQPLSLTDYALSLVPAAATATSALIDAATERHLSYSLFLRQVKSLASSLQSLTPLSKGHVALILTPASLHVPVLYFSLLSLGVIIAPANPLSSPSELTHLVRLTKPAIAFATSATANKIPNLKFGTILTDSPLFNSMLEGEARTRRVELSQSDSAAILFSSGTTGRVKGVLLTHRNFIALIGGFYHLRRMVVVGGAAAEDPHPVSLFTLPLFHVFGFFMLVRAIAVGETLVLMQRFDFEGMLKAVERYKITHMPVSPPLVVALAKSELVKKYDLSSLRLLGSGGAPLGKEVVEDFRARFPNAEIGQGYGLTESGGGAARMVGPDEAERHASVGRLAENMEAKIVDPVTGEALLPGQKGELWLRGPTIMKGYVGDEKATVEALDSEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHILHTNPEIADAAVVPYPDEDAGQIPMAFVVRKPGSNITADQVMEFVAKQVSPYKKIRRVSFINSIPKSPAGKILRRELLDYALSSGSSKL 556
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2349 556 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Ssu1g2349 556 Gene3D - 450 550 IPR045851 -
Ssu1g2349 556 SUPERFAMILY Acetyl-CoA synthetase-like 62 549 - -
Ssu1g2349 556 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 28 545 - -
Ssu1g2349 556 Pfam AMP-binding enzyme 62 454 IPR000873 -
Ssu1g2349 556 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 28 545 - -
Ssu1g2349 556 CDD 4CL 56 544 - -
Ssu1g2349 556 Pfam AMP-binding enzyme C-terminal domain 463 538 IPR025110 -
Ssu1g2349 556 Gene3D - 29 449 IPR042099 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu1g2349 Ssu-Chr1 65843473 65848872 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2349 7 556 Monolignol Biosynthesis Gene Families AT5G63380 59.227 0.0 668
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2349 K01904 - gmx:100777435 928.317
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2349 1 65843473 65848872 Ssu1g2349 1 65843473 65848872 ECH