Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2331 ATGGGTCGACAGGGACAACGAGTTTGTGCGGCCTGTACCAACAACTGTCTATTGTTCCACCAAATAAATCAAACCTCACCTACCTCTTTCTTCAAGGTCATTGCTAAAGAAGAATATTTAACAACTTTGTATATTCCTCCTGCTTTTAGTAGTACTGTGTCAGACTTGTTGAACAAGAAAATCATTCTCAATGATTCAAGCGGGCAGCATTGGGAGGTAAAAGTATCAGAAGTTAATGGTTCTTTTGCTTTTGAGGAAGGATGGAATGTTTTTTCATTGGATCATGGGCTTAAGGTTGGATATCTTCTGGTTTTCAATTACATTAAGGATTTGGACTTTGATGTCAAGATCTATGATACATCTGCATGTGAAAAGCTTGATTTTTCTAAACAAAGAAATCAGAAGAAAAGAAGTAGGGGCAGAAGTGGCTCTCCAGTCAGAGATGGTATGTTGGTTAGACCAGGTCCCAATGCCTTAGTTGTCTCCGGGCTTCATGTGCCAAAAATGAAAAGCCAGCATAAGGAGGATGACTTAGTAGTACCACAAAATAGTAAAGAGGGTGCCCAACATATGTACATATCAGAGCACTGTGAAGACCCATATTATTCGACAAGCCTAGAATTTGAGCAGAACCATGGTGTTGATGGGACTATGAAAATTGCAAACGGAGATTCAAAAGTTTCTAATGTTGATTATGGATcctatatatatcaaaatgatgCAATCCTATGTAGTAAAGATACTATATTTGAAGTAGGTATGGGAGCTGCCTTAGATATATCTGAACTTGAAATGTCTGGAAGTAATACTTCTCTAGGTGAGGCAGACAAAAGCACGTATGACAGGACATCAACTTTGAAacttaaagaaaacaaagagaacAAAGCCATCATGTCCAACGGGGAAGCTCAAGAGTGCCAATTTGCCGAGGGCTTAGAAAGTGATCAGGTTGCAATACCCAAAAAGGAACATGCTTTGCATATTGGTGGTTTTCACGACACCAAACAGGAGTTCAATGGGATCCCAAATCTCTTAGATGCTCATATTCACAATGGTGAAATGAAGAAAGTGCCTGGGGACATAATTCCCAAATTGGGCGGTTCCATGGATAAATTGAATGTAACAgGTGAAATGTCTAATAAGTTCAAGAAAGAGCTTGTAACTCTCGATGAATTGGGAGCAACAGGGTTGCCAAAGGAGATGATGGGAGAGTTGGGTCACTGTTCTGACACGTTTAATCAGGATAATGAGAGTCACTTTAAAACTGCAGCCACTCTCTTCTGTGTGGTGCCCAATGATGATGGTTGCCTTCAATTGCCTGCATGCCTGCCTTCGATTCGCAAAGTAAAACTATTCCAGCAAAGGAAGATGGTAGTGGTACTTCGGGATCCTCTGAGGAGATTGTGGCCGGTCTTTTACCATGAAGAACCGCAGTTAAAATTACTGACACATGGATGGTTAGATTTTAGCAGAGCTAATAACATTCAACCAGCTGATGAGTGTATTTTTGAGGCTGAGGCTGAGCCCGAGAGCAAGTCTAAACGTATCTTAGCTGTACGAATAAACCACAAGTGA 1575 0.3987 MGRQGQRVCAACTNNCLLFHQINQTSPTSFFKVIAKEEYLTTLYIPPAFSSTVSDLLNKKIILNDSSGQHWEVKVSEVNGSFAFEEGWNVFSLDHGLKVGYLLVFNYIKDLDFDVKIYDTSACEKLDFSKQRNQKKRSRGRSGSPVRDGMLVRPGPNALVVSGLHVPKMKSQHKEDDLVVPQNSKEGAQHMYISEHCEDPYYSTSLEFEQNHGVDGTMKIANGDSKVSNVDYGSYIYQNDAILCSKDTIFEVGMGAALDISELEMSGSNTSLGEADKSTYDRTSTLKLKENKENKAIMSNGEAQECQFAEGLESDQVAIPKKEHALHIGGFHDTKQEFNGIPNLLDAHIHNGEMKKVPGDIIPKLGGSMDKLNVTGEMSNKFKKELVTLDELGATGLPKEMMGELGHCSDTFNQDNESHFKTAATLFCVVPNDDGCLQLPACLPSIRKVKLFQQRKMVVVLRDPLRRLWPVFYHEEPQLKLLTHGWLDFSRANNIQPADECIFEAEAEPESKSKRILAVRINHK 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2331 524 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 9 521 IPR044837 -
Ssu1g2331 524 SUPERFAMILY DNA-binding pseudobarrel domain 25 123 IPR015300 -
Ssu1g2331 524 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0905400-LIKE ISOFORM X1 9 521 - -
Ssu1g2331 524 SUPERFAMILY DNA-binding pseudobarrel domain 449 506 IPR015300 -
Ssu1g2331 524 CDD B3_DNA 451 504 IPR003340 GO:0003677
Ssu1g2331 524 SMART B3_2 30 121 IPR003340 GO:0003677
Ssu1g2331 524 Gene3D - 21 123 IPR015300 -
Ssu1g2331 524 Pfam B3 DNA binding domain 30 119 IPR003340 GO:0003677
Ssu1g2331 524 ProSiteProfiles B3 DNA-binding domain profile. 459 524 IPR003340 GO:0003677
Ssu1g2331 524 ProSiteProfiles B3 DNA-binding domain profile. 28 121 IPR003340 GO:0003677
Ssu1g2331 524 Gene3D - 410 523 IPR015300 -
Ssu1g2331 524 CDD B3_DNA 29 119 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2331 20 124 B3 DNA Binding Superfamily AT4G01580 30.000 4.34e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu1g2331 B3 8.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2331 - - ccaj:109789322 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2331 1 65524541 65528474 Ssu1g2331 1 65524541 65528474 ECH