Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2329 ATGGAGCCTTTTGAATCCGAATCAGTTAGTTCCTCCACCAAAGACCCGCAATTGGGTGAACCTTCTTCCCCTCTTCCCCCCCACGATCACGATCCTCAACCTTCAGATCTCAATCACGTTACCCAGGTCGATGATGCACTTGGCGGGGAGCTTCAGAACAAGTTGGATTTGAAGGATGGGGATGAGACTGAGACTGAGAATAAAGGTTCGAACTTGGAAGATGGGGGTGAAAAATTGAGTGATGAAGCTGCTGCTGCCCCAGAAGATGGTAAGGGAGAAGAAGGttgtgatgatggtggtggtgatggtgataatgatgttgttgttgttgttgatgatgatgatggttgGAATGGTGGGGATGAGGGATGTGATTGGATTGAGAATGTGAATGAGAGTGAAAGTGATAAGGTGGGTGGAGATGTTGATGGGGTGGAGAACAAGGATGAGAGGAGCAGTGGTAGAGCTCAACAGTACCCCTTGAGGCCAGAGGCTGAAGACTGttcattttatctcaaaactgggaCTTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCTCTTAGGAGGAAAAACCAGGCTAAAAAGGAGAATGcgggagaaaaagaagaacagGCAGAAAGATCAGGCCAGACGGAATGCAAGTATTATTTAAGGTCTGGTGGGTGTAAGTTTGGAAAGGCTTGTAAGTTTAATCACACAAGAGGAAAGTGTTCAGCATCCCCAATTGTAGAGCTTAACTTCCTTGGCCTGCCTATTCGTGTGGGAGAGAGAGAGTGCCCCTATTACATGCGCACTGGCTCTTGCAAGTTTGGAGCAAACTGCAAGTTCAATCATCCTGATCCTACAGCTGTTGGAGGAGGTGATTCTCCTTCTGGTTATGGTAATGGGAGTTCTATTTCATTACATGGTGTATCACAATCATCTGTATCCCCATGGTCTTCTAGTAGAACATTAAATGAATCTGCTCCTTTTGTGCCGGTGATACTTTCAGCTAATCCAGGGGTTTCTCCCCGAAGTTCTGAATGGAATGGATATCAGGCACCTGTCTATCTACCTGAGAGGAGTTTGCATCCACCTTCAACATATGTGATGAACAACCCAGCTTTGGAAACAAATGTTTATATGCACCATCAAAAACAAATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCCGAATGCAGCTATTTCCTAAAAACAGGGGATTGCAAGTTTAAATCTAATTGCAAATTTCACCACCCAAAGAATAGGATTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTACCTTTGAGACCgGAGCAGAATGTTTGCACATATTACAGCCGTTACGGACTTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAATCCCCCACCCTCAACTATACCTGGCCTTGATCAACAATCCTCGTACACAAACTCATCTAGTGTTGATGTGGCTGAAAATGGAGGTGCCAGTGATGGGAATCAGCAGTCTGTGTAA 1509 0.4208 MEPFESESVSSSTKDPQLGEPSSPLPPHDHDPQPSDLNHVTQVDDALGGELQNKLDLKDGDETETENKGSNLEDGGEKLSDEAAAAPEDGKGEEGCDDGGGDGDNDVVVVVDDDDGWNGGDEGCDWIENVNESESDKVGGDVDGVENKDERSSGRAQQYPLRPEAEDCSFYLKTGTCKFGFNCKFNHPLRRKNQAKKENAGEKEEQAERSGQTECKYYLRSGGCKFGKACKFNHTRGKCSASPIVELNFLGLPIRVGERECPYYMRTGSCKFGANCKFNHPDPTAVGGGDSPSGYGNGSSISLHGVSQSSVSPWSSSRTLNESAPFVPVILSANPGVSPRSSEWNGYQAPVYLPERSLHPPSTYVMNNPALETNVYMHHQKQMQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPEQNVCTYYSRYGLCKFGPACKFDHPINPPPSTIPGLDQQSSYTNSSSVDVAENGGASDGNQQSV 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2329 502 SUPERFAMILY CCCH zinc finger 212 238 IPR036855 GO:0046872
Ssu1g2329 502 SUPERFAMILY CCCH zinc finger 256 282 IPR036855 GO:0046872
Ssu1g2329 502 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 441 463 IPR000571 GO:0046872
Ssu1g2329 502 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 212 234 IPR000571 GO:0046872
Ssu1g2329 502 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 258 281 IPR000571 GO:0046872
Ssu1g2329 502 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 393 418 IPR000571 GO:0046872
Ssu1g2329 502 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 166 188 IPR000571 GO:0046872
Ssu1g2329 502 Gene3D - 137 198 - -
Ssu1g2329 502 ProSiteProfiles Zinc finger C3H1-type profile. 162 190 IPR000571 GO:0046872
Ssu1g2329 502 ProSiteProfiles Zinc finger C3H1-type profile. 209 237 IPR000571 GO:0046872
Ssu1g2329 502 MobiDBLite consensus disorder prediction 130 155 - -
Ssu1g2329 502 SUPERFAMILY CCCH zinc finger 435 463 IPR036855 GO:0046872
Ssu1g2329 502 SUPERFAMILY CCCH zinc finger 396 420 IPR036855 GO:0046872
Ssu1g2329 502 MobiDBLite consensus disorder prediction 107 121 - -
Ssu1g2329 502 MobiDBLite consensus disorder prediction 1 19 - -
Ssu1g2329 502 Gene3D - 437 491 - -
Ssu1g2329 502 Gene3D - 359 428 - -
Ssu1g2329 502 MobiDBLite consensus disorder prediction 1 159 - -
Ssu1g2329 502 ProSiteProfiles Zinc finger C3H1-type profile. 391 419 IPR000571 GO:0046872
Ssu1g2329 502 SMART c3hfinal6 162 189 IPR000571 GO:0046872
Ssu1g2329 502 SMART c3hfinal6 437 464 IPR000571 GO:0046872
Ssu1g2329 502 SMART c3hfinal6 391 418 IPR000571 GO:0046872
Ssu1g2329 502 SMART c3hfinal6 209 236 IPR000571 GO:0046872
Ssu1g2329 502 SMART c3hfinal6 255 282 IPR000571 GO:0046872
Ssu1g2329 502 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 11 497 - -
Ssu1g2329 502 MobiDBLite consensus disorder prediction 51 98 - -
Ssu1g2329 502 ProSiteProfiles Zinc finger C3H1-type profile. 437 465 IPR000571 GO:0046872
Ssu1g2329 502 MobiDBLite consensus disorder prediction 471 502 - -
Ssu1g2329 502 MobiDBLite consensus disorder prediction 468 502 - -
Ssu1g2329 502 Gene3D - 199 285 - -
Ssu1g2329 502 ProSiteProfiles Zinc finger C3H1-type profile. 255 283 IPR000571 GO:0046872
Ssu1g2329 502 PANTHER PROTEIN PHOSPHATASE RELATED 11 497 - -
Ssu1g2329 502 SUPERFAMILY CCCH zinc finger 161 190 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2329 Ssu-Chr1 65410926 65415661 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2329 387 489 C2H2 Transcription Factor Family AT3G02830 45.631 5.35e-22 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu1g2329 zf-CCCH 4.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2329 - - gmx:100809906 711.064