Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu1g2328 | ATGCATCTACCTTCAACATATGTCATGAACAACCCAGCTATGGAAACAAATGTTTATATGCACCATCAAAAGCAAATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCCGAATGCAGCTATTTCCTAAAAACAGGGGATTGCAAGTTTAAATCTAACTGCAAATTTCACCACCCAAAGAATCGGATAGCAAGGCTACCTCCGCGTAACCTCAGTGACAAGGGTCTACCTTTGAGACCGCCACCTGTCTACCTATATAAGAGGAGTCTGCATCCACCTTCAACATATGTCATGAACAACCCAGCTATGGAAACAAATGTTTATATGCACCATCAAAAAAATATGCAGGTTGAAGAGTTTCCACAAAGGCCTGGTCAACCCGAATGCATCTATTTTAAAAGAACTGGGGATTGCAAGTTTAAATCTAATTGCAAATTTCACCACCCAAAGATTCGGATTGTAAGATTACCTCCATGCAACCTCTGTGACAATTTGAGACCGATTGAAGAGTTTCCAGAAAGTCCTTATCAACCCAAATGCAACTATTTCAAAATAACTGAGGATTGCAAGTTTAAACTTAATTGCATATTTCGCCATCCAAAGAATCGGATTCCAACATTACCTCCATGCAAGCTCAATGACAAGGGTCTACCTTTGAGACCAGATAAGAGTGTTTGCCTGCAATACAGCCGTTCCGGACTTTGCAGATTTGGACGAGCTTGTAGGTTCGACCACCCACCACTCTCAACTATGGCTCGACTTTATCAACAATCCGCGAACACAAACTCAGCTAGTGTTGATGTGGCTGAAAATGAAGGTGCCAGTGATGGGAATCAGCAGTCTGTGTAA | 852 | 0.4214 | MHLPSTYVMNNPAMETNVYMHHQKQMQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPRNLSDKGLPLRPPPVYLYKRSLHPPSTYVMNNPAMETNVYMHHQKNMQVEEFPQRPGQPECIYFKRTGDCKFKSNCKFHHPKIRIVRLPPCNLCDNLRPIEEFPESPYQPKCNYFKITEDCKFKLNCIFRHPKNRIPTLPPCKLNDKGLPLRPDKSVCLQYSRSGLCRFGRACRFDHPPLSTMARLYQQSANTNSASVDVAENEGASDGNQQSV | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu1g2328 | 283 | Pfam | RNA-binding, Nab2-type zinc finger | 181 | 201 | - | - | |
| Ssu1g2328 | 283 | ProSiteProfiles | Zinc finger C3H1-type profile. | 34 | 62 | IPR000571 | GO:0046872 | |
| Ssu1g2328 | 283 | PANTHER | PROTEIN PHOSPHATASE RELATED | 1 | 81 | - | - | |
| Ssu1g2328 | 283 | Gene3D | - | 92 | 160 | - | - | |
| Ssu1g2328 | 283 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 126 | 151 | IPR000571 | GO:0046872 | |
| Ssu1g2328 | 283 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 223 | 248 | IPR000571 | GO:0046872 | |
| Ssu1g2328 | 283 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 36 | 61 | IPR000571 | GO:0046872 | |
| Ssu1g2328 | 283 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 83 | 166 | - | - | |
| Ssu1g2328 | 283 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 168 | 276 | - | - | |
| Ssu1g2328 | 283 | SUPERFAMILY | CCCH zinc finger | 222 | 247 | IPR036855 | GO:0046872 | |
| Ssu1g2328 | 283 | ProSiteProfiles | Zinc finger C3H1-type profile. | 221 | 249 | IPR000571 | GO:0046872 | |
| Ssu1g2328 | 283 | PANTHER | PROTEIN PHOSPHATASE RELATED | 83 | 166 | - | - | |
| Ssu1g2328 | 283 | PANTHER | PROTEIN PHOSPHATASE RELATED | 168 | 276 | - | - | |
| Ssu1g2328 | 283 | ProSiteProfiles | Zinc finger C3H1-type profile. | 124 | 152 | IPR000571 | GO:0046872 | |
| Ssu1g2328 | 283 | SMART | c3hfinal6 | 222 | 248 | IPR000571 | GO:0046872 | |
| Ssu1g2328 | 283 | SMART | c3hfinal6 | 176 | 202 | IPR000571 | GO:0046872 | |
| Ssu1g2328 | 283 | SMART | c3hfinal6 | 34 | 61 | IPR000571 | GO:0046872 | |
| Ssu1g2328 | 283 | SMART | c3hfinal6 | 124 | 151 | IPR000571 | GO:0046872 | |
| Ssu1g2328 | 283 | Gene3D | - | 174 | 265 | - | - | |
| Ssu1g2328 | 283 | MobiDBLite | consensus disorder prediction | 264 | 283 | - | - | |
| Ssu1g2328 | 283 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 1 | 81 | - | - | |
| Ssu1g2328 | 283 | ProSiteProfiles | Zinc finger C3H1-type profile. | 175 | 203 | IPR000571 | GO:0046872 | |
| Ssu1g2328 | 283 | SUPERFAMILY | CCCH zinc finger | 128 | 150 | IPR036855 | GO:0046872 | |
| Ssu1g2328 | 283 | Gene3D | - | 18 | 69 | - | - | |
| Ssu1g2328 | 283 | SUPERFAMILY | CCCH zinc finger | 39 | 63 | IPR036855 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu1g2328 | Ssu-Chr1 | 65398612 | 65401065 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu1g2328 | 172 | 272 | C2H2 Transcription Factor Family | AT3G02830 | 43.564 | 1.72e-20 | 88.2 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Ssu1g2328 | zf-CCCH | 8.8e-06 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu1g2328 | - | - | gmx:100809906 | 253.832 |
Event-related genes