Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2327 ATGGGAGGTTCAGAGGGAAACGGCGACGTTTTGCCATGGCTGAAATCGCTGCCGGTGGCGCCGGAGTACCGGCCGAGCGTGGCGGAGTTCCAAGATCCAATCGGCTACATATTCAAGATCGAGAAGGAGGCTTCCAAGTACGGCATCTGCAAAATCATCCCACCGTTCCCACCTTCCCCGAAGAAAACCGCCATCGCGAACCTCAACCGGTCGCTGGCGGTTACCGGTTCCACATTCACCACGCGCCAGCAGCAGATCGGGTTCTGCCCCCGCAGGCCCCGGCCCGTCCAGCGGCCCGTTTGGCAGAGCGGCGACCACTACACCTTCCAAGAGTTCGAATCCAAGGCCAAGTCCTTCGAGAAGACGTACCTCAAACGCCACAGCAAGAAGGGCTCGGGCTCGGGCTCGGGCTCGTTCTCGGGCCTGGGCCCGCTCGAGACCGAGACACTCTTCTGGAAGGCCACGCTGGACAAACCCTTCTCCGTGGAGTACGCGAACGACATGCCGGGTTCCGCGTTTTCCCCCAAATGCCGGCACGCAGGGGATCCCAGCTCCCTCGCGGACACCCCGTGGAACATGCGAGCGGTTTCGCGGGCCAACGGTTCGCTCCTGCGGTTCATGAAGGAGGAGATTCCGGGCGTTACTTCCCCTATGCTTTACGTGGCCATGCTCTTCAGCTGGTTCGCGTGGCACGTCGAGGACCACGACCTGCACAGCTTGAACTACCTCCACATGGGCGCTGGCAAGACCTGGTACGGCGTCCCCCGCGACGCCGCCGTCGCATTCGAGGAAGTCGTTAGGGTTCACGGCTACGGCGGAGAGATTAACCCGCTCGTTACTTTTGCTATTCTTGGTGAGAAAACCACAGTGATGTCGCCTGAAATATTTATTAGCGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTTGTGACGTTTCCAAGAGCCTATCACACTGGGTTCAGTCATGGTTTTAATTGTGGAGAGGCAGCGAACATTGCAACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCATTAAATTATCCTCCCATGGTTTCGCATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCcagAATTCCTGTGGGTATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGCGAAGGAGAAACTGTAATTAAACAACTATTTGTCCAAGATGTGTTACAGAACAATGATCTGCTTCATGTACTTGGGAAAGGATCTGCTGTAGTGCTTCTTCCTCGCAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCTCAACAATCCATCTATGTAAGCAATTCTGAGGGAATGCATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAGTCATGGAATCAAGCAAGAAAAAAGTTTCTATTCTGTGAAAGACAAGTTTACTATGTTGTGTGAAAGGAACAGGATCTCCTCTTTTGATGTAAATGGTAACATATGCACTTCAAGTTCTAAGCCACTTCAAAGAGACAATGAAGGAGAAACTAGTCAAGGAGATGGGTTGTCAGATCAGAGATTGTTTTCATGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTATCTAGCAATAAATTTACTATTGGCCATGAAGATACAACTATTCCTGAGCCAAATATGTATACAGGATGGATGAAAAAGAATGTCCAGGATGGTATACAAGATGTTCCTGTTCAATCTTCTCGGGAGGCTTTAAATACTGAAAGTGAAAACGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCTGACTCTGAGGAAGATCAAATTGCGGTCGACACTCATGAAGCAAATCTGATAAACTCTGCTTCAGAAAGTTTACTTTCTCATACTCAAGATTCCCATGCTAGTCCCATCACTGCACCTGATAGGGGAGATGATATTCCTTCAAAGAGTGGCAGTTGTGAGGATTTTATGCATCATAGATGTGACAGTAATTTGAGTCATCAATCTTTTGACCACTCTTTTAAGAAACAGGATTATAATAACACATCAGGGGTTACATTTGAAAATACGAGGACGGTGCCTAATTCCACCTCTAATTGTTCCCAAGAGGGCCAAGACACTCTAAATGCTGAAAGGCCATTGTCTAACAAGTCTATGGTTCcctttgataataaaaatgctTCAATGGCGCTACAATCTGATGAAGACTCATCCAGAATGCATGTTTTTTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTACGTCCAATAGGTGGAGCCCACATATTGCTCCTATGTCATCCAGattatcCCAAGATAGAGGCTGAAGCAAAATTGGTGGCAGAAGATTTGGGGATTGATTACATGTGGAAGAATATTGCATACAGGCATGCTTCCAAGGAGGATGAGGAGAGGATCCAGTCAGCTCTGGACAGTGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTATAGTGCACATCTTAGCCGCTCTCCTATTTATAGTAAGCAGATGCCTTACAATTCTGTCATATACTATGCATTTGGTTGTAGCTCTCCAGCAAGCTCACCCATAGAGCCTAAGGTCTACCAAAGAAGGGTCAACAAGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAAAAAGAGATTCTGAAGATGTTGAGGATGAGAAACTCTTACTTGGGTGGATATTACCTGATGAGAAAATTGAGAGATCAGAAAGTGTCCCCAAAAGCGAAACTACTAGCAGAAAATCAggtaagaaaaggaaaatgacaGCAGAGAATGGACGAACCAGGAAAGGAAGTCATGCTAAGAAAAATGTAGTTTCAGATAATTCCACTGAAGATAAATCCAACTCACAGCCAAGGAGGATTCTTAGAAGTAAGAAAGCCTGGCACGTTGAGAGAGATCGTGCTGCTTTGAAAGGGGATTATTCTCCTCCATATCATCATAGAAAACCTATAAGCAAGCAAACAAACTGCACTGAAAGTGATGTGGTTTCTGATGATTTgcttgatgatgatgatcacGTGCAGCATAGGAGGAATGTTTATGTTGAAAAAGCTACATTTATTGACAATGATATGGTTTCAAATGATACAGTGGACTGTGATTCTGATTGGCAGCAGAGGGACGAACTTAGCAGCAAGCACGTTGTAGATATGGAGAGAAATGCAATTTCGGAGGACTCTTTGGATGTTGGTTCTCTTCAGCTTCATATGAAGACTTCCAAAGGCAAGCATGCCAAATACATTAGTGAAGAAGATATAATTTCTGATGACCAAATGGAGAGTCGTTTTCAAAAGCGGCAAAAGAGAATCCCTAAAAGCAGGCAGGGCAAATACCTTACAGGAAAAGATATAATATCTGATGACCAACTAGAGCTGAAAATGCAGAAGCAGCAAGGGAGGAATCCTAAAAGCAGGCAAGCCAAATATCTCAATGAAGAGGCTATTGCATCAGATGACCAATTGGAGGGCCATTATCATAGGAATCAAAGAAGGAATCCTAAAGGCAGGCAGGCCAAATGTTTAGCAGGGGAAGATGAAACATCTGATGACCAATTGGAGGATCATTGTCGGAAGCAGCAAACAAGTTTCTCTAGGAAAAGGCAAAACAAAGGCATTGATAGAgaagttaaaaatgaaatgtcTGATGACCAATTGGAGGATCATTTTCTGAAGCAGCAGAGAAGATTTCCTAAGAGCAGGCAAAACAAACAAACTGATAAAGAAGTTATGGATGACTCGGCTGAAAATAATTCTCATCTGCTGCATAGAACTCCAAAAAGGAAGCAAGCTAAATGCATGGAcgaaaataatatgaattcaGATGATGAAATGGAAGATGATCAGCAGCTGAGGAGAACTCTTCGAAGTAAACAATCTAAACCAAAGACACTTCAACAGATGAAACGAGCTAATTCCCTCCAAGTGAAAAACCAGGCATCTCAGTCCATAAAACGGGGTTCTCGGATGCTTATGAAATCAAAGGCTCCTCAGCAAATAAAACAGCCTTCTCATTTGCGGAATAAGCAATCCAGTAACTCCCGAGAGTTTAGTTTACATAtggaagaggaggaagaggaagaaggtgGACCTAGCACACGCCTTAGGAAGAGATCCACCAAAGCTCAGGAATCTGaaggaaaattgaaagacaagcaaacaaaaaagaaggggAAGAATGCTACAGCTGCAAAGGTTTCAGTTGGCCGTGCCAAAATGAAGGATGGGGAAGCAGAATATCATTGTGATATTGATGGGTGCACTATGAGTTTTGGGTCTAAACAGGAGCTGCAGCATCACAAGAGAAATATCTGCCCTGTCAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAGCACCGTCGAGTTCATGAGGATGAGCGCCCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCACATTCGAGTCCACACTGGTGCACGGCCTTATGTATGTGCTGAGCCAGGTTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAGTCGTCAATAG 4806 0.4386 MGGSEGNGDVLPWLKSLPVAPEYRPSVAEFQDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNRSLAVTGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDHYTFQEFESKAKSFEKTYLKRHSKKGSGSGSGSFSGLGPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRHAGDPSSLADTPWNMRAVSRANGSLLRFMKEEIPGVTSPMLYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEIFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPVGISAEPRSSRLKDKKKGEGETVIKQLFVQDVLQNNDLLHVLGKGSAVVLLPRSSVDISVCSKLRVGSQQSIYVSNSEGMHSSKGFVSDDLVFNRSHGIKQEKSFYSVKDKFTMLCERNRISSFDVNGNICTSSSKPLQRDNEGETSQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAARYLMSADCSFFNDWVVGSGVSSNKFTIGHEDTTIPEPNMYTGWMKKNVQDGIQDVPVQSSREALNTESENGNTALALLASAYGNSSDSEEDQIAVDTHEANLINSASESLLSHTQDSHASPITAPDRGDDIPSKSGSCEDFMHHRCDSNLSHQSFDHSFKKQDYNNTSGVTFENTRTVPNSTSNCSQEGQDTLNAERPLSNKSMVPFDNKNASMALQSDEDSSRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKLVAEDLGIDYMWKNIAYRHASKEDEERIQSALDSEEAIPGNGDWAVKLGINLFYSAHLSRSPIYSKQMPYNSVIYYAFGCSSPASSPIEPKVYQRRVNKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKLLLGWILPDEKIERSESVPKSETTSRKSGKKRKMTAENGRTRKGSHAKKNVVSDNSTEDKSNSQPRRILRSKKAWHVERDRAALKGDYSPPYHHRKPISKQTNCTESDVVSDDLLDDDDHVQHRRNVYVEKATFIDNDMVSNDTVDCDSDWQQRDELSSKHVVDMERNAISEDSLDVGSLQLHMKTSKGKHAKYISEEDIISDDQMESRFQKRQKRIPKSRQGKYLTGKDIISDDQLELKMQKQQGRNPKSRQAKYLNEEAIASDDQLEGHYHRNQRRNPKGRQAKCLAGEDETSDDQLEDHCRKQQTSFSRKRQNKGIDREVKNEMSDDQLEDHFLKQQRRFPKSRQNKQTDKEVMDDSAENNSHLLHRTPKRKQAKCMDENNMNSDDEMEDDQQLRRTLRSKQSKPKTLQQMKRANSLQVKNQASQSIKRGSRMLMKSKAPQQIKQPSHLRNKQSSNSREFSLHMEEEEEEEGGPSTRLRKRSTKAQESEGKLKDKQTKKKGKNATAAKVSVGRAKMKDGEAEYHCDIDGCTMSFGSKQELQHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSRQ 1601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2327 1601 MobiDBLite consensus disorder prediction 973 1053 - -
Ssu1g2327 1601 ProSitePatterns Zinc finger C2H2 type domain signature. 1570 1594 IPR013087 -
Ssu1g2327 1601 ProSiteProfiles Zinc finger C2H2 type domain profile. 1508 1537 IPR013087 -
Ssu1g2327 1601 Pfam JmjC domain, hydroxylase 218 336 IPR003347 -
Ssu1g2327 1601 MobiDBLite consensus disorder prediction 1221 1473 - -
Ssu1g2327 1601 SUPERFAMILY Clavaminate synthase-like 104 372 - -
Ssu1g2327 1601 SMART c2h2final6 1508 1532 IPR013087 -
Ssu1g2327 1601 SMART c2h2final6 1538 1562 IPR013087 -
Ssu1g2327 1601 SMART c2h2final6 1485 1507 IPR013087 -
Ssu1g2327 1601 SMART c2h2final6 1568 1594 IPR013087 -
Ssu1g2327 1601 MobiDBLite consensus disorder prediction 1365 1393 - -
Ssu1g2327 1601 MobiDBLite consensus disorder prediction 973 1064 - -
Ssu1g2327 1601 ProSiteProfiles Zinc finger C2H2 type domain profile. 1538 1567 IPR013087 -
Ssu1g2327 1601 MobiDBLite consensus disorder prediction 1164 1188 - -
Ssu1g2327 1601 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 7 1591 - -
Ssu1g2327 1601 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 1591 - -
Ssu1g2327 1601 SMART cupin_9 185 354 IPR003347 -
Ssu1g2327 1601 MobiDBLite consensus disorder prediction 671 697 - -
Ssu1g2327 1601 Gene3D Cupin 13 358 - -
Ssu1g2327 1601 ProSitePatterns Zinc finger C2H2 type domain signature. 1540 1562 IPR013087 -
Ssu1g2327 1601 ProSiteProfiles JmjC domain profile. 178 354 IPR003347 -
Ssu1g2327 1601 SMART JmjN_1 19 60 IPR003349 -
Ssu1g2327 1601 ProSiteProfiles Zinc finger C2H2 type domain profile. 1568 1599 IPR013087 -
Ssu1g2327 1601 SUPERFAMILY beta-beta-alpha zinc fingers 1524 1566 IPR036236 -
Ssu1g2327 1601 MobiDBLite consensus disorder prediction 1432 1463 - -
Ssu1g2327 1601 Gene3D Classic Zinc Finger 1537 1565 - -
Ssu1g2327 1601 Gene3D Classic Zinc Finger 1566 1600 - -
Ssu1g2327 1601 Gene3D Classic Zinc Finger 1508 1536 - -
Ssu1g2327 1601 MobiDBLite consensus disorder prediction 1400 1420 - -
Ssu1g2327 1601 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Ssu1g2327 1601 Pfam jmjN domain 21 54 IPR003349 -
Ssu1g2327 1601 MobiDBLite consensus disorder prediction 1243 1360 - -
Ssu1g2327 1601 ProSitePatterns Zinc finger C2H2 type domain signature. 1510 1532 IPR013087 -
Ssu1g2327 1601 SUPERFAMILY beta-beta-alpha zinc fingers 1556 1590 IPR036236 -
Ssu1g2327 1601 MobiDBLite consensus disorder prediction 732 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2327 Ssu-Chr1 65371467 65380923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2327 785 886 C2H2 Transcription Factor Family AT5G04240 34.314 1.67e-14 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu1g2327 JmjC 2.1e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2327 - - gmx:100775271 2754.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2327 1 65371467 65380923 Ssu1g2327 1 65371467 65380923 ECH
Ssu1g2327 1 65371467 65380923 Ssu6g1464 6 24055333 24062159 PCT