Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2323 ATGGCATCAAGCGAGGGGTTTCTGACCGATGGACAGAGAGAGATTCTGAAAATAGCGAGTCAGAATGTCGAGAATTTGTCTTCTTCGCCGAAATCTCCATCCTCCTTGCTTGCtgaacatcatcatcatcatcatgtgAGAGCTCCTTCTGGGGGTGGTAAGGCACAGACTCTTGGGCATGCTGTCAGGCATGTGCGTCGATCACACTCGGGAAAGTTTGTGCGGGTGAAGAAGGATGGTGCTGGTGGTAAGGGCACTTGGGGGAAATTGCTTGATACGGATGGTGAATCTCATATAGACAGGAATGATCCAAACTATGATAGCGGCGAGGAACCTTATCAACTGGTTGGATCTACTGTTACTGACCCTTTAGATGAATTCAAGAAAGCCGTAGTATCCATCATAGAGGAATATTTCAGTAATGGGGATGTGGACTTGGCTGCATCTGATCTCAGAGAACTTGGATCAAATGAATATTATCCATACTTCATTAAGCGTCTTGTATCCATGGCCATGGATAGGCatgataaagagaaagagatggCTTCGGTTCTGCTTTCAGCATTGTATGCTGATGTCATCAGTCCTGCACAGATTAGGGATGGGTTTTTTATACTTATCGAATCTGCTGATGATCTTGCAGTGGACATACTGGATGCAGTTGACATCCTGGCTTTATTTCTGGCACGTGCTGTTGTGGATGACATCATTCCCCCAGCCTTTCTTGCCAGGGCCAAGAAGGCTCTTCCAGAATCTTCCAAGGGAGTTCAAGTAATCCAGACTGCCGAAAAAAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAGAGGCGATGGGGTGGTAGCACTCACATCACTGTTGAAGATGTGAAGAAGAGGATTGCTGATTTACTAAGAGAATATGTGGATAGTGGGGACACATTTGAAGCCTGTAGGTGTATACGTGAGTTGGGGCTTTCATTCTTCCACCATGAAGTCGTGAAGAGGGCTCTGGTACTTGCCATGGAGATCCGTTCAGCAGAACCTCAAATGTTGAAGCTATTAAAAGAAGCAGCAGAAGAAGGACTCATTAGTTCCAGCCAAATGGTGAAAGGATTTTCTCGTTTGGAGGAAGTCCTAGATGATCTTGCTCTTGATATTCCGTCAGCTAAAACCCTGTTTCAGTCATTGGTACCTAAGGCAATATTGGAAGGATGGCTTGATGCTTCATTTTTGAAACACTCTAGTGAAGATGGGGATATCCTAGTTGAAGATGAAAAGGTGAGGAAGTACAAAAAAGAGGTGGTAACTATAATTCATGAATATTTTCTCTCTGATGACATTCCTGAACTCATTCGAAGTCTTGAAGATCTCGGGGCACCTGAGTACAACCCAATATTTTTGAAGAAGCTAATAACTCTGGCCATGGACAGAAAGAACAGGGAAAAGGAAATGGCATCAGTATTGCTATCTGCTCTTCATATAGAGATCTTCTCAACCGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAAAGTGCTGAAGATACAGCACTGGATGTATTGGATGCATCAAATGAGCTTGCTCTTTTTTTAGCCCGAGCTGTGATTGATGATGTATTAGCTCCTCTGAATTTAGAGGAAATTAGCAGCAGGTTGCCCCCAAAATGCAGTGGGAGTGAAACTGTGCGGATGGCTCGATCACTTGTTGCTGCTCGTCATGCTGGTGAGAGACTATTGAGATGTTGGGGTGGTGGGACTGGATGGGCTGTTGAAGATGCCAAGGACAAGATCATGAAGCTCTTGGAGGAGTATGAGAGTGGAGGTGTTGTGAGTGAAGCATGCCAGTGTATTCGTGACCTAGGAATGCCTTTCTTTAACCACGAGGTTGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGAAGAATGACAGGATGCTGGATCTGCTACAGGAATGCTTTAGTGAAGGTCTGATCACCATCAATCAGATGACGAAAGGGTTCACCAGAATCAAGGATGGTCTTGATGATCTTGCTCTGGACATTCCAAACGCTATGGAGAAATTCGGCTTCTATTTGGAGCATGCCCTGAAGAAGGGCTGGCTCTTACCATCATTTGATTCCACTGTCACAGATGTTTAA 2124 0.4388 MASSEGFLTDGQREILKIASQNVENLSSSPKSPSSLLAEHHHHHHVRAPSGGGKAQTLGHAVRHVRRSHSGKFVRVKKDGAGGKGTWGKLLDTDGESHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVVSIIEEYFSNGDVDLAASDLRELGSNEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFILIESADDLAVDILDAVDILALFLARAVVDDIIPPAFLARAKKALPESSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEDVKKRIADLLREYVDSGDTFEACRCIRELGLSFFHHEVVKRALVLAMEIRSAEPQMLKLLKEAAEEGLISSSQMVKGFSRLEEVLDDLALDIPSAKTLFQSLVPKAILEGWLDASFLKHSSEDGDILVEDEKVRKYKKEVVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDVLDASNELALFLARAVIDDVLAPLNLEEISSRLPPKCSGSETVRMARSLVAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITINQMTKGFTRIKDGLDDLALDIPNAMEKFGFYLEHALKKGWLLPSFDSTVTDV 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2323 707 Gene3D - 277 410 - -
Ssu1g2323 707 Gene3D - 575 705 - -
Ssu1g2323 707 SUPERFAMILY ARM repeat 584 701 IPR016024 -
Ssu1g2323 707 ProSiteProfiles MI domain profile. 290 411 IPR003891 -
Ssu1g2323 707 SUPERFAMILY ARM repeat 422 581 IPR016024 -
Ssu1g2323 707 MobiDBLite consensus disorder prediction 24 57 - -
Ssu1g2323 707 Pfam MA3 domain 292 402 IPR003891 -
Ssu1g2323 707 Pfam MA3 domain 426 535 IPR003891 -
Ssu1g2323 707 Pfam MA3 domain 127 238 IPR003891 -
Ssu1g2323 707 Pfam MA3 domain 589 696 IPR003891 -
Ssu1g2323 707 ProSiteProfiles MI domain profile. 126 247 IPR003891 -
Ssu1g2323 707 SUPERFAMILY ARM repeat 124 284 IPR016024 -
Ssu1g2323 707 ProSiteProfiles MI domain profile. 424 545 IPR003891 -
Ssu1g2323 707 ProSiteProfiles MI domain profile. 587 706 IPR003891 -
Ssu1g2323 707 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 699 - -
Ssu1g2323 707 PANTHER PROGRAMMED CELL DEATH 4 1 699 IPR039778 GO:0045892
Ssu1g2323 707 SMART ma3_7 588 697 IPR003891 -
Ssu1g2323 707 SMART ma3_7 425 536 IPR003891 -
Ssu1g2323 707 SMART ma3_7 291 402 IPR003891 -
Ssu1g2323 707 SMART ma3_7 127 238 IPR003891 -
Ssu1g2323 707 SUPERFAMILY ARM repeat 287 409 IPR016024 -
Ssu1g2323 707 Gene3D - 119 267 - -
Ssu1g2323 707 Gene3D - 417 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2323 Ssu-Chr1 65321756 65324495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2323 591 684 Eukaryotic Initiation Factors Gene Family AT5G57870 32.990 1.30e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2323 - - gmx:100815729 1285.78