Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2321 ATGATGGATGGGCGGCGGCATTCAGTTGATATACCAATTTCTAAGACTCTTGTGGCACTGAGGAGAGTCAGGTCATTGAGGGATCCGTCAACTAATTCTATGAGCAAACTCTCTTCTTTGGTTGATAATGGGCACTGGGAAAACGGTTCTGGTAACGACATTTCCCTGCGGTTTTCGGATGCTGCTCGGGCATGTGATTCTGATGACAATGCTGCTTTCAGATCAAGGATTTTGGGTTTTAAAGGACCAAGGGAGCAGAATGATGCTGATTTTGTATTGAATTCTGGCCTGTTGAACTCAAGGTTGAAGCCTAGAGGGATGTCTAGTAAGGATGGCCAACAAGGTGATGAACAAGTTTACTCTAAGCCTAATCTACAGTGCATTTCTGGAAATAAATCACCGAGTGAAAGCTGTGGAAGCAACCATGGGGGTAAAGGATTGGACTTGGCCTGTATTGTGCTTCCCAGCAATAATTTCAAGGATGGGGATTCATGCTATGTAACAACTGCTAGATCATCTCAATTAGGGAGAATAGATTGCTCTAAGTCAGCCAAAAAGTCTCTACGCAAGAATCAAGTGAAACCATCAGAGGTAGTGGGCAGTGTTGATAGCCATATAGGCAGTCCATGCCCTTCTGGTTATGATGCTTTCTTGCCCCATAGTGCTTCAGTAGGTATAAATCAGGATGTTGATTTTTtagataataatgataatggatGTGGAATAAGCTGCTGTTGGTCAAAATCACCAAGGTTAAGGGAATCAAGTCTATATTGCGAGATAGAAGACCGTCCCTTGATATCGCACCGTGTTGATGAGACAGAACTTCATGCACACAGAAGCATGAGACACAACGGTGGTGGGATTAGTCCAAATTTGGAAACTCCTAGAAGTTTATCTATGAAATTTAGGCCTAAATCATTTAGTGATTTGGTGGGACAAAATGTGGTAGTAAGGTCTCTTTTGGGTGCCATCTCCAGAGGGAGGATAACATCATTTTATCTCTTCTATGGTCCGCGTGGTACCGGCAAGACATCTTCCTCTAGGATATTTGCTGCTGCACTGAATTGCCTCTCTGTTGAGGAGCAAAGGCCATGTGGTCTATGCAGAGAATGTGTTATATTCTTTTCTGGAAGGAGTAAAGATGTTAAGGAAGTGGATTCTGTGAGAATCAATCGTGCAGACCAGGTTAAATCCCTTGTTAAGAATGCAAGCATCCCTCCGGTTTCTTCACGTTTTAAGGTCTTCATTATTGATGAGTGCCAGTTATTGAGTGGGGAGACATGGGCAACCATTTCAAATAGCCTAGAGAACCTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAACTTCCTCGAAGTGCCATTTCCTGGGCTCAGAGGTATCACTTTCCAAAGGTTAAAGATGCTGACATTGTATGCAGGTTAGAAAAAATTTGTGCCCAAGAAGGTCTTGATTTTGAACGGGATGCTTTGGACTTTATTGCTGCAAAATCCAGTGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGTTTGCTTGGTAGAAAGATCAATATTTCTTTAGCTTACGAGCTTACTGGTATCGTTTCTGATGATGAGTTGCTTGATTTGCTGGATCTGGCTTTGTCATCTGATACTTCAAATACAGTTATAAGAGCTCGGGAGCTGATGAGATCGAGGATAGATCCTTTGCAACTTGTATCTCAGCTGGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGAAAATGGTGGTTCTGAAGTCAGAAGTAGATTTTCTAGGAGATACACCTCGGAAGCTGATCTGCAGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAGCAGTTAAGAATTTCGAAGAATCAAACAACATGGTTCACTGTAGCTCTCTTACAGTTAAGCTCTATAGATTATCCATCTGTGGATGCAAATGAGACCAAGTTGAGTCTGAGAGGTGCATGCAATGGAGGGAAGAGCTTGGAGCATTTTGCTACGGGCCTGTGTGATAACAAGTCATACAGATTAGGAGTGCCAGAGGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCTACGGAGATGTGTCATTCTAGTCACCTCAAAACTTTTCTTAGGAAGAAGGGGAAGTTGTCTTCACTTCATGTTGATCGCAGTACAGCTAGTCTTGCTATTGCCGAGTTAGAGTTCCACCATCGCCACCATGTGTCTAAGGCTGAGAAGTCATGGAGAGTGATCGCAAGTTCCTTGCAGTTCATATTGGGTTGCAACGTTGAGTTGAAGATCAATTGTGCACCATGTGCTTCTGATTCTAAGTATGCCAAACTGAAGATTTCATCTTTCAGTATATTCAGTTGTTCACGCAGAATTCGACAACAGAAGTCATTATCATCTAATGAACAAGGAAGTGAATCAGATTATGCTGATTACGCCTCTGAAAATCCCATGATGAAGGATAGAATTTCTACCTCTGATTGTGGAATGGATGCTGTAACGGCACTGAGGAGTTGTGAAGGGAATTTGCTCAGCTCAGGAGAAAGATTTTTGAATAGATCATTTCAAGAGACTATGGGGACATCATGTGCTGGAGTGAATTCCTCTAAGGAAGAGGGATGCAATTGCACACGTCTAGATCCATCAATCCTCGATTCAGATAATCACTCTAACTGTTTTCCTAAAACTCTCTGGCTTCCAAAGAAGTTCCGTTCTTCATATTCATCCAAGTTGACTTTTCGGGGTATTCAACAACAGAAAGATGTTGTTTTATCTGTCCCGAAGTGTACATGTTCTGGGACATATACCTATAACGAATCCTGCATTTTTTCCAGTAGTTGTAAGAACTGTACCAAAGCCTGA 2889 0.4168 MMDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLSSLVDNGHWENGSGNDISLRFSDAARACDSDDNAAFRSRILGFKGPREQNDADFVLNSGLLNSRLKPRGMSSKDGQQGDEQVYSKPNLQCISGNKSPSESCGSNHGGKGLDLACIVLPSNNFKDGDSCYVTTARSSQLGRIDCSKSAKKSLRKNQVKPSEVVGSVDSHIGSPCPSGYDAFLPHSASVGINQDVDFLDNNDNGCGISCCWSKSPRLRESSLYCEIEDRPLISHRVDETELHAHRSMRHNGGGISPNLETPRSLSMKFRPKSFSDLVGQNVVVRSLLGAISRGRITSFYLFYGPRGTGKTSSSRIFAAALNCLSVEEQRPCGLCRECVIFFSGRSKDVKEVDSVRINRADQVKSLVKNASIPPVSSRFKVFIIDECQLLSGETWATISNSLENLSQHVVFVMITPDLDKLPRSAISWAQRYHFPKVKDADIVCRLEKICAQEGLDFERDALDFIAAKSSGSVRDAEMMLDQMSLLGRKINISLAYELTGIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENGGSEVRSRFSRRYTSEADLQKLNNALKILSETEKQLRISKNQTTWFTVALLQLSSIDYPSVDANETKLSLRGACNGGKSLEHFATGLCDNKSYRLGVPEDHKGTLDSIWYKATEMCHSSHLKTFLRKKGKLSSLHVDRSTASLAIAELEFHHRHHVSKAEKSWRVIASSLQFILGCNVELKINCAPCASDSKYAKLKISSFSIFSCSRRIRQQKSLSSNEQGSESDYADYASENPMMKDRISTSDCGMDAVTALRSCEGNLLSSGERFLNRSFQETMGTSCAGVNSSKEEGCNCTRLDPSILDSDNHSNCFPKTLWLPKKFRSSYSSKLTFRGIQQQKDVVLSVPKCTCSGTYTYNESCIFSSSCKNCTKA 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2321 962 Pfam DNA polymerase III, delta subunit 314 471 - -
Ssu1g2321 962 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 109 943 - -
Ssu1g2321 962 Gene3D - 472 534 - -
Ssu1g2321 962 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 109 943 - -
Ssu1g2321 962 SUPERFAMILY post-AAA+ oligomerization domain-like 535 645 IPR008921 GO:0003677|GO:0006260
Ssu1g2321 962 Coils Coil 610 633 - -
Ssu1g2321 962 SMART AAA_5 330 473 IPR003593 -
Ssu1g2321 962 CDD AAA 312 460 - -
Ssu1g2321 962 Gene3D - 535 648 - -
Ssu1g2321 962 CDD HLD_clamp_pol_III_gamma_tau 471 534 IPR045085 -
Ssu1g2321 962 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 298 644 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Ssu1g2321 962 Gene3D - 292 469 IPR027417 -
Ssu1g2321 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 520 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2321 Ssu-Chr1 65296788 65300527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2321 289 536 Core DNA Replication Machinery Family AT1G21690 25.000 3.41e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2321 - - gmx:100812040 1627.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2321 1 65296788 65300527 Ssu1g2321 1 65296788 65300527 ECH
Ssu6g1462 6 24023030 24034375 Ssu1g2321 1 65296788 65300527 PCT