Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2319 ATGTTTAGTTTAATCACGCCATTTAACCCggcttttctctctttatatattccCCCTCCTACGTACTTCACTTCTCACCTCCTtcctttccctctctctctacCTCACTTAATTAGCAAAGAGGAGCTAACATGGCAAGCACTCCCCTCTCTTTGCTTGTCTTGCTACTTCTTCCTCCTCACTCCAACCCTCATTTCCTCTTCACCTGTTCAAAACCCTGAATCCGTCGTACAAGAGGTAAACAGGAAAATCAATGCCTCTACAGCTAGGCCAAGGAGGAACTTGGGGTACCTCTCGTGTGGGAGTGGTAACCCCATTGATGATTGCTGGAGGTGTGACCCCAATTGGGAGCAGAACAGGCAAAGGCTAGCAGATTGTGCAATTGGGTTCGGCAAGAACGCCATTGGTGGAAGGGACGGGAAGATCTACGTGGTGGACGACGACGGCGACGACGACCCGGTGAACCCGAAACCGGGCACCCTCCGCCACGCCGTGATCCAAGACGAGCCGCTGTGGATCATCTTCGCCAGAGACATGACCATCCAGCTGAAGGAAGAGCTCCTCATGAACTCCTTCAAGACCATCGACGGCAGAGGCGCTAGCGTGCACGTTGCGGGTGGTCCATGCATCACCATACAATACGTGACCAACGTTATCATCCATGGGCTTCACATACACGATTGCAAGCAAGGTGGGAACGCTATGGTGCGGGACTCCCCACGGCACTACGGGTGGAGAACCGTATCGGACGGCGATGGCGTGTCCATCTTTGGGGGAAGTCACATTTGGGTGGACCATTGCTCGCTGTCCAACTGCAACGATGGTTTGATCGATGCCATCCATGGGTCCACCGCTATTACCATCTCCAACAATTACATGACGCAACATGATAAGGTCATGTTGTTGGGTCACAGCGACTCGTACACCCAAGACAAGAACATGCAAGTCACGATTGCTTTCAACCACTTTGGTGAAGGCCTTGTTCAGAGGATGCCAAGGTGTAGGCTTGGATATTTCCATGTGGTGAACAATGATTATACTCACTGGGAAATGTATGCCATTGGGGGCAGTGCTAATCCAACCATCAACTGCCAGGGCAACAGATTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAACGTGAAGATACGCCTGAGAGTGAATGGCAGAGTTGGAACTGGAGGTCAGAAGGGGACTTGTTAGTAAACGGTGCGTTTTTCACTGCATCGGGTGCTGGAGCCTCCTCTAGCTATGCAAGGGCTTCTAGCTTAAGTGCAAGACCATCTTCCCTTGTTGGTTCCATAACAACAGGTGCTGGTGCACTCAGCTGTAAGAAAGGTTCTCCTTGCTGA 1359 0.4982 MFSLITPFNPAFLSLYIPPPTYFTSHLLPFPLSLPHLISKEELTWQALPSLCLSCYFFLLTPTLISSSPVQNPESVVQEVNRKINASTARPRRNLGYLSCGSGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAIGGRDGKIYVVDDDGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMTIQLKEELLMNSFKTIDGRGASVHVAGGPCITIQYVTNVIIHGLHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTQHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINCQGNRFVAPDDRFSKEVTKREDTPESEWQSWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALSCKKGSPC 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2319 452 SUPERFAMILY Pectin lyase-like 104 443 IPR011050 -
Ssu1g2319 452 Pfam Pectate lyase 187 369 IPR002022 -
Ssu1g2319 452 PANTHER PECTATE LYASE 50 449 - -
Ssu1g2319 452 PRINTS Pollen allergen Amb family signature 394 418 IPR018082 -
Ssu1g2319 452 PRINTS Pollen allergen Amb family signature 126 143 IPR018082 -
Ssu1g2319 452 PRINTS Pollen allergen Amb family signature 150 175 IPR018082 -
Ssu1g2319 452 PRINTS Pollen allergen Amb family signature 186 202 IPR018082 -
Ssu1g2319 452 PRINTS Pollen allergen Amb family signature 250 271 IPR018082 -
Ssu1g2319 452 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Ssu1g2319 452 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Ssu1g2319 452 PRINTS Pollen allergen Amb family signature 423 446 IPR018082 -
Ssu1g2319 452 SMART amb_all 178 375 IPR002022 -
Ssu1g2319 452 PANTHER PECTATE LYASE 18-RELATED 50 449 IPR045032 GO:0030570
Ssu1g2319 452 Gene3D - 103 445 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2319 Ssu-Chr1 65225492 65228135 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2319 51 452 Polysaccharide Lyase AT5G63180 80.542 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2319 K01728 - gmx:100814679 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2319 1 65225492 65228135 Ssu6g1461 6 23986948 23989908 ECH
Ssu9g1759 9 54886947 54898281 Ssu1g2319 1 65225492 65228135 ECH
Ssu1g2319 1 65225492 65228135 Ssu1g2319 1 65225492 65228135 ECH
Ssu6g1461 6 23986948 23989908 Ssu1g2319 1 65225492 65228135 PCT