Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2318 ATGGCAAGCACTCCCCTCTCTTTGCTTGTCTTGCACTTCTTCCTCCTCACTCCAACCCTCATTTCCTCTTCACCTGTTCAAAACCCTGAATCCGTCGTACAAGAGGCCAGGAGGAACTTGGGGTACCTCTCGTGTGGGAGTGGTAACCCCATTGATGATTGCTGGAGGTGTGACCCCAGTTGGGAGCAGAACAGGCAAAGGCTAGCAGATTGTGCAATTGGGTTCGGCAAGAACGCCATTGGTGGAAGGACGGAAGATCTACGTGGTGACGACGACGGCGACGACGACCCGGTGAACCCGAAACCGGGCACCCTCCGCCACGCCGTGATCCAAGACGAGCCGCTGTGGATCATCTTCGCCAGAGACATGACCATCCAGCTGAAGGAAGAGCTCCTCATGAACTCCTTCAAGACCATCGACGGCAGAGGCGCTAGCGTGCACGTTGCGGGTGGTCCATGCATCACCATACAATACGTGACCAACGTTATCATCCATGGGCTTCACATACACGATTGCAAGCAAGGTGGGAACGCTATGGTGCGGGACTCCCCACGGCACTACGGGTGGAGAACCGTATCGGACGGCGATGGCGTGTCCATCTTTGGGGGAAGTCACATTTGGGTGGACCATTGCTCGCTGTCCAACTGCAACGATGGTTTGATCGATGCCATCCATGGGTCCACCGCTATTACCATCTCCAACAATTACATGACGCAACATGATAAGGTCATGTTGTTGGGTCACAGCGACTCGTACACCCAAGACAAGAACATGCAAGTCACGATTGCTTTCAACCACTTTGGTGAAGGCCTTGTTCAGAGGTGTAGGCTTGGATATTTCCATGTGGTGAACAATGATTATACTCACTGGGAAATGTATGCCATTGGGGGAAGTGCTAATCCAACCATCAACTGCCAGGGCAACAGATTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAACGTGAAGATACGCCTGAGAGTGAATGGCAGAGTTGGAACTGGAGGTCAGAAGGGGACTTGTTAGTAAACGGTGCGTTTTTCACTGCATCGGGTGCTGGAGCCTCCTCTAGCTATGCAAGGGCTTCTAGCTTAAGTGCAAGACCATCTTCCCTTGTTGGTTCCATAACAACAGGTGCTGGTGCACTCAGCTGTAAGAAAGGTTCTCATTGCTGA 1182 0.5228 MASTPLSLLVLHFFLLTPTLISSSPVQNPESVVQEARRNLGYLSCGSGNPIDDCWRCDPSWEQNRQRLADCAIGFGKNAIGGRTEDLRGDDDGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMTIQLKEELLMNSFKTIDGRGASVHVAGGPCITIQYVTNVIIHGLHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTQHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRCRLGYFHVVNNDYTHWEMYAIGGSANPTINCQGNRFVAPDDRFSKEVTKREDTPESEWQSWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALSCKKGSHC 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2318 393 MobiDBLite consensus disorder prediction 82 103 - -
Ssu1g2318 393 Gene3D - 48 386 IPR012334 -
Ssu1g2318 393 PRINTS Pollen allergen Amb family signature 71 88 IPR018082 -
Ssu1g2318 393 PRINTS Pollen allergen Amb family signature 94 119 IPR018082 -
Ssu1g2318 393 PRINTS Pollen allergen Amb family signature 194 215 IPR018082 -
Ssu1g2318 393 PRINTS Pollen allergen Amb family signature 364 387 IPR018082 -
Ssu1g2318 393 PRINTS Pollen allergen Amb family signature 335 359 IPR018082 -
Ssu1g2318 393 PRINTS Pollen allergen Amb family signature 130 146 IPR018082 -
Ssu1g2318 393 PRINTS Pollen allergen Amb family signature 271 290 IPR018082 -
Ssu1g2318 393 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Ssu1g2318 393 MobiDBLite consensus disorder prediction 83 101 - -
Ssu1g2318 393 Pfam Pectate lyase 130 310 IPR002022 -
Ssu1g2318 393 SMART amb_all 122 316 IPR002022 -
Ssu1g2318 393 PANTHER PECTATE LYASE 2 390 - -
Ssu1g2318 393 SUPERFAMILY Pectin lyase-like 37 387 IPR011050 -
Ssu1g2318 393 PANTHER PECTATE LYASE 18-RELATED 2 390 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2318 Ssu-Chr1 65200403 65202899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2318 1 393 Polysaccharide Lyase AT5G63180 76.773 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2318 K01728 - gmx:100814679 691.804