Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2317 ATGGATGCCCTTGTTTTCCCAATCCCCTCCACCACCCACTTTCACAACATCCAGACCCAGGTCTTACCCGAACCCGACCTTTATTTACAAACTCCCGGTGGGAAGCGCATTCCAGCGCACGCAACCATTTTgGCTTCGGCATCCCCGGTTCTAGAAAACGTCATACCGTCCAACCGAATCGTTAAAATCCACGGCGTTCCAGACGGCGCCGTCACGGCCTTCGTGGGGTTCCTCTACTCCTCCAGGTGCACGGAGGAGGATATGGACAAGTACGGAATGCACCTTCTAGCATTGTCGCACGTGTATTTGGTGACGCAGCTGAAACAGAGGTGCATCAAGGGACTGGGCGAGCGCGTGAGCACGGAGAACGTGGTGGACGTGTTGCAACTGGCTCGGCTCTGCGACGCACCGGATCTGTACCTCAAGTGCGCGAAGCTCCTCACGAATCATTTCAAAGCCGTGAAAGAAACAGAGGGCTGGAAATTCCTGGAGAACCACGACCCCTGGCTTGAACTCGACATTCTCCGCTTCATGGACGAACTCGAAtcgAGGAAGAGGAAGTTGAGGAAGCGGAGGGAGGAGGAGAGGTTGTACGCGCAGCTGAGCGAGGCGATGGAGTGTTTGGAGCACATATGCACGGAGGGGTGTACGCACGTGGGGCCGTACGATGTTGAGGTTGGGCGACAGAGAGGACCGTGCTCTAAGTTCGCCACGTGTCAGGGTTTGCAGGTGTTGATCCGACACCTCGCCACTTGCAAGAGGAGGGTGAGCGGAGGGTGTTTGCGGTGTAAGCGCATGTGGCAGCTCTTCAGATTACACTCCTCCATTTGCCTGCGCCAAGATTCCTGCAAGGTTCCTCTTTGCAGGCAAATTCAATTGAAAATGGAGCAAGAGAACAGGAAAGAAGACGCAAGGTGGAAACTACTAGTGAGGAAGGTGGCCTCGGCCAAAGCCATGTCTTCCTTGGCACTGCCAAAGAGGAAGCGGGATGAGGAAACTAGACCAGAGGgaccataa 1017 0.5457 MDALVFPIPSTTHFHNIQTQVLPEPDLYLQTPGGKRIPAHATILASASPVLENVIPSNRIVKIHGVPDGAVTAFVGFLYSSRCTEEDMDKYGMHLLALSHVYLVTQLKQRCIKGLGERVSTENVVDVLQLARLCDAPDLYLKCAKLLTNHFKAVKETEGWKFLENHDPWLELDILRFMDELESRKRKLRKRREEERLYAQLSEAMECLEHICTEGCTHVGPYDVEVGRQRGPCSKFATCQGLQVLIRHLATCKRRVSGGCLRCKRMWQLFRLHSSICLRQDSCKVPLCRQIQLKMEQENRKEDARWKLLVRKVASAKAMSSLALPKRKRDEETRPEGP 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2317 338 Pfam TAZ zinc finger 202 288 IPR000197 -
Ssu1g2317 338 Gene3D TAZ domain 192 317 IPR035898 -
Ssu1g2317 338 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 14 334 IPR044513 -
Ssu1g2317 338 SUPERFAMILY POZ domain 26 116 IPR011333 -
Ssu1g2317 338 SUPERFAMILY TAZ domain 194 297 IPR035898 -
Ssu1g2317 338 ProSiteProfiles BTB domain profile. 25 87 IPR000210 GO:0005515
Ssu1g2317 338 SMART TAZ_2 195 289 IPR000197 -
Ssu1g2317 338 Pfam BTB/POZ domain 26 113 IPR000210 GO:0005515
Ssu1g2317 338 CDD BACK 120 164 - -
Ssu1g2317 338 Gene3D Potassium Channel Kv1.1; Chain A 18 114 IPR011333 -
Ssu1g2317 338 PANTHER BTB/POZ AND TAZ DOMAIN PROTEIN 14 334 - -
Ssu1g2317 338 Coils Coil 178 211 - -
Ssu1g2317 338 Gene3D - 118 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2317 Ssu-Chr1 65149148 65154091 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Ssu1g2317 BTB 3.7e-07 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2317 - - gmx:100813611 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2317 1 65149148 65154091 Ssu1g2317 1 65149148 65154091 ECH
Ssu6g1460 6 23951482 23954850 Ssu1g2317 1 65149148 65154091 PCT