Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2309 ATGGCTGGAAAAACTCATCTCTGGCTCTTTTCActgttttctctcttctttttcattcacGCAAAACTTGATCTCCACCCTTCAGACCTCAAGGCTCTCGTAACTCTGCAAAAGGGCCTCGGAGTCAACGGTCAACTGGATGAACCTCAGGCATGTAACACGGAGGGCGTGTTGTGCGAGAGAAGGCTCTCCGGCAAGGAAACCTACGTGCTCCGAATCACAAGGTTGGTGTTCAAATCGAAGCAGTTGAATGGCGTGTTGTCCCCTGCCATAGGACGCCTCACCGAGCTCAAAGAACTCTCTCTCTCCGACAACCAACTCGTTGACCGAGTCCCTCCCCAAATCGTTGACTGCCGAAAGCTCGAGATCCTCGACCTCGCCGACAACCTCTTCTCCGGCGAAGTCCCCTCGGAATTGTCCTCCCTCACGCGCCTCCGCGTGTTAGACATCTCCTCCAACAAGCTCTCCGGCAACCTCAACTTCCTCAAGTACTTCCCCAACCTCGAAACCCTCTCCGTCGCCGACAACCTCTTCACCGGAAGAGTCCCTCCCTCCGTCCGCTCCTTCCGCAACCTCCGACACTTCAACTTCTCCGGCAACCGCTTCCTCGAACCCTCTCTGTCGCTCAGAGACACCACTCTCCCCAATCGTTACATCTTAGCCGAAACAAGAACCGGTGCTCCTGCTCCTGCACATGCTTCTCCTCACAAGGGAAAATCCAACACTTCTAACACTTCCGCTGCAGCAGCACCTGGTCCTTCACCTAACCACCACAAGCACAAGCACGGTAAGAGAAAACTCGCAGGGTGGATTCTCGGGTTCGTGGCAGGGGCTCTCGCTGGGACCTTGTCAGGGTTcgtgttttctcttttcttcaaaCTGGCTCTGGCTTTGATCAAAGGAAGAGGAAAGAGAGCGGGCCCTGATATTTATAGTCCCTTGATTAAGAAAGCAGAGGATTTGGCCTTCTTGGAGAAAGAAGAGGGACTTGCCTCGTTGGAAATAATTGGACGAGGTGGTTGTGGAGAGGTGTACAAAGCTGAGTTACCAGGAAGCAATGGTAAACTGATTGCCATAAAGAAAATCGTTCAGCCTCCGAAAGACGGTGCTGAATTAGCAGAGGAGGATAGTAAGCTTCTCCATAAGAAAATGAGGCAAATTCGGTCCGAGATTAACACTGTTGGTCAAATTAGACACCGAAACCTTCTGCCTCTGCTCGCGCACGTGTCTAGGCCGGATTGTCACTACCTTGTGTACGAGTTCATGAAGAACGGGAGCTTGCAGGATACGTTAAGCAAGGTTGAAACCGGCGAGAGGGAGTTGGATTGGTTGGCGCGGCACAAAGTCGCGCTGGGTGTGGCTGCTGGGCTCGAATACCTTCACATGAGTCACAATCCGCGCATAATTCACAGGGATCTTAAGCCTGCCAACATTCTTCTGGACGATGACATGGAGGCGCGAATTGCTGACTTTGGGCTTGCGAAGGCAATGCCGGATTACAAGACTCACATAACAACCTCCAACGTGGCTGGCACTGTGGGGTATATTGCTCCCGAGTATCATCAGATACTCAAGTTCACTGATAAGTGTGATATTTACAGCTTTGGGGTTATACTTGGGGTGTTGGTGATTGGGAAGCTTCCTTCCGATGAGTTCTTCCAGCACACGGACGAGATGAGTTTGGTCAAGTGGATGAAAAAGGTCATGACCTTCGAGAATCCCAAGGAGGCCATTGACACGAAGCTTCTGGGGAATGGGTATGAGGAGCAGATGCTTCTGGTTCTGAAGATTGCGTGCTTTTGCACACTGGATGATCCCAAGGAGAGACCTAACAGTAAGGATGTCAGGTGCATGTTGTCTCAGATCAAACACTGA 1875 0.504 MAGKTHLWLFSLFSLFFFIHAKLDLHPSDLKALVTLQKGLGVNGQLDEPQACNTEGVLCERRLSGKETYVLRITRLVFKSKQLNGVLSPAIGRLTELKELSLSDNQLVDRVPPQIVDCRKLEILDLADNLFSGEVPSELSSLTRLRVLDISSNKLSGNLNFLKYFPNLETLSVADNLFTGRVPPSVRSFRNLRHFNFSGNRFLEPSLSLRDTTLPNRYILAETRTGAPAPAHASPHKGKSNTSNTSAAAAPGPSPNHHKHKHGKRKLAGWILGFVAGALAGTLSGFVFSLFFKLALALIKGRGKRAGPDIYSPLIKKAEDLAFLEKEEGLASLEIIGRGGCGEVYKAELPGSNGKLIAIKKIVQPPKDGAELAEEDSKLLHKKMRQIRSEINTVGQIRHRNLLPLLAHVSRPDCHYLVYEFMKNGSLQDTLSKVETGERELDWLARHKVALGVAAGLEYLHMSHNPRIIHRDLKPANILLDDDMEARIADFGLAKAMPDYKTHITTSNVAGTVGYIAPEYHQILKFTDKCDIYSFGVILGVLVIGKLPSDEFFQHTDEMSLVKWMKKVMTFENPKEAIDTKLLGNGYEEQMLLVLKIACFCTLDDPKERPNSKDVRCMLSQIKH 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2309 624 MobiDBLite consensus disorder prediction 236 251 - -
Ssu1g2309 624 SUPERFAMILY L domain-like 50 209 - -
Ssu1g2309 624 Gene3D Phosphorylase Kinase; domain 1 321 421 - -
Ssu1g2309 624 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 6 624 - -
Ssu1g2309 624 ProSiteProfiles Protein kinase domain profile. 330 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2309 624 Gene3D Transferase(Phosphotransferase) domain 1 422 624 - -
Ssu1g2309 624 SMART serkin_6 330 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2309 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Ssu1g2309 624 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 624 - -
Ssu1g2309 624 Gene3D Ribonuclease Inhibitor 28 213 IPR032675 -
Ssu1g2309 624 MobiDBLite consensus disorder prediction 225 262 - -
Ssu1g2309 624 Pfam Leucine rich repeat 96 155 IPR001611 GO:0005515
Ssu1g2309 624 Pfam Protein kinase domain 333 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2309 624 SUPERFAMILY Protein kinase-like (PK-like) 327 619 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2309 Ssu-Chr1 65076967 65078841 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2309 10 624 Receptor kinase-like Gene Family AT2G31880 66.242 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Ssu1g2309 Pkinase 2.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2309 - - gmx:100811980 1052.35