Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2306 ATGTCTATCACTTCCACTGCCTTCAAGTCCCTCACCATGGCCGAATCGTGCCTCCTCTCTTCTCCCTCCTCACTCTTCTACAACAAAACCAAGCCCCTTGTTTACTCGCCTCCCTCCAAACCCCTCACGCTCCAATTCTCGTTTCTCAACTCCTCGCCCtcgctctctctctccctcGCCGCCCGAACCCACCGTTCCCCAGTGCTCACTCTCGTGGCCCAAACGTCCGATTGGGCCCAGCAAGAGGAAGACGACACCGCCACCTTCCAAGACGAAGAACAGGGCCTCGGCGAAACCGAAGCGGGCCTGTCCGATTGGGAGCCCAACGGCGAAGTCGCGGGAGAAGAAGAGGGTTTCGTGGAACCGCCAGAAGAGGCGAAACTCTTCGTTGGGAACTTGCCCTACGACGTTGATAGCCAGAAATTGGCCATGCTCTTCGAGCAAGCTGGAACCGTTGAAATCGCCGAGgttatttataataggGAAACTGACCAGAGTCGCGGATTTGGGTTTGTTACGATGAGTACCATTGAAGAAGCTGAGAAAGCTGCGGAGAAATTCAACCGCTATGATTATGATGGAAGACTGTTGACTGTTAATAAGGCTTCTCCAAGAGGAACTCGGCCTGAACGGCCACCTCGTACCTTTGAGCCTGCCTTGTCAGTCTATGTTGGCAATTTGCCATGGGATGTTGATAATACCAGGTTGGAGCAAATCTTCAGTGAACATGGTAAGGTTGTGAATGCTCGAGTAGTCTATGACAGGGAGACTGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGTCGGCAATGAATGATGCCGTTGCTGCTCTTGATGGTCAGAATTTGGACGGAAGGGCAATTAGGGTGAGTGTTGCTGAGGACAGGCCAAGGCGTAGCTCCTTTTGA 918 0.5098 MSITSTAFKSLTMAESCLLSSPSSLFYNKTKPLVYSPPSKPLTLQFSFLNSSPSLSLSLAARTHRSPVLTLVAQTSDWAQQEEDDTATFQDEEQGLGETEAGLSDWEPNGEVAGEEEGFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTIEEAEKAAEKFNRYDYDGRLLTVNKASPRGTRPERPPRTFEPALSVYVGNLPWDVDNTRLEQIFSEHGKVVNARVVYDRETGRSRGFGFVTMSDESAMNDAVAALDGQNLDGRAIRVSVAEDRPRRSSF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2306 305 CDD RRM_HP0827_like 127 204 - -
Ssu1g2306 305 PANTHER OS02G0815200 PROTEIN 3 95 - -
Ssu1g2306 305 CDD RRM_HP0827_like 223 297 - -
Ssu1g2306 305 PANTHER RIBONUCLEOPROTEIN 3 95 - -
Ssu1g2306 305 SUPERFAMILY RNA-binding domain, RBD 214 303 IPR035979 GO:0003676
Ssu1g2306 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 292 IPR000504 GO:0003723
Ssu1g2306 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 197 IPR000504 GO:0003723
Ssu1g2306 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Ssu1g2306 305 PANTHER RIBONUCLEOPROTEIN 109 305 - -
Ssu1g2306 305 MobiDBLite consensus disorder prediction 80 117 - -
Ssu1g2306 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 204 IPR000504 GO:0003723
Ssu1g2306 305 Gene3D - 211 305 IPR012677 -
Ssu1g2306 305 Gene3D - 71 210 IPR012677 -
Ssu1g2306 305 SUPERFAMILY RNA-binding domain, RBD 122 214 IPR035979 GO:0003676
Ssu1g2306 305 SMART rrm1_1 221 294 IPR000504 GO:0003723
Ssu1g2306 305 SMART rrm1_1 127 200 IPR000504 GO:0003723
Ssu1g2306 305 PANTHER OS02G0815200 PROTEIN 109 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2306 Ssu-Chr1 65008732 65011150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2306 128 305 Eukaryotic Initiation Factors Gene Family AT3G16380 26.966 2.60e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2306 - - gmx:100810381 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2306 1 65008732 65011150 Ssu6g1453 6 23838765 23841214 ECH
Ssu1g2306 1 65008732 65011150 Ssu1g2306 1 65008732 65011150 ECH
Ssu6g1453 6 23838765 23841214 Ssu1g2306 1 65008732 65011150 PCT