Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2296 ATGGAGACGGAGCGCATCGTTGAATTCCCTCACACCTACATGGATCGACCCCCGAGAAAGAGGGCGCGTTTGGGCTGGGACATCGCTGAGGTCCCCAAGGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTATGCTCCTTCAGAACACCCCCCTAGTTCTCTGTTTAAGGGAGTTGCTCGAAATGGTTCTCCCCCATGGCGAGATGATGACAAAGATGGCCATTACATGTTTGAGCTTGGAGAAAATTTAACTTCTCGCTATAAGATCCATAGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGGGATAAAGAAGTATCGAGAGGCAGCCATGATAGAAATTGAGGTACTGCAACAGCTTGTGAAACACGATAAAGGTAGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCCAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTATTGGAATGTGTAGCATTTATGCATGACTTACGCATGATCCATACTGACCTGAAGCCTGAAAACATACTTCTAGTTTCACCAGAGTATCTTAAAATTCCTGACTACAAGAATACATCCAGATCACCAAGTTCCTTTTTCAAGAGAGTGCCCAAGTCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACTACATATGAACGAGAAGATCAGAATTACATTGTATCAACTCGTCATTATAGGGCACCTGAAGTTATCCTTGGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATATTGGTTGAATTATGCACCGGTGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTGGCAATGATGGAGAGGGTTCTTGGTCCTATACCGCAGCAGATGTTGAAGAGAGTTGACCGACATGCAGAGAAGTATGTCCGAAGGGGTAGATTGGACTGGCCAGAGGGTGCAACCTCGCGAGAGAGCATCAAAGCTGTAATGAAGCTTCCCCGACTACAGAACCTTGTAATGCAGCATGTTGATCATTCGGCTGGAGATCTAATACATCTTTTGCAGGGGCTACTTAGATATGACCCCTCTGAAAGACTTACAGCTAGGGATGCTCTGAGGCATTCTTTCTTTACGAGAGATCACCTTAGGAGATAA 1278 0.4421 METERIVEFPHTYMDRPPRKRARLGWDIAEVPKAQVGLFCGQEVENISSYAPSEHPPSSLFKGVARNGSPPWRDDDKDGHYMFELGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLVKHDKGSNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREIGWQLLECVAFMHDLRMIHTDLKPENILLVSPEYLKIPDYKNTSRSPSSFFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPIPQQMLKRVDRHAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLVMQHVDHSAGDLIHLLQGLLRYDPSERLTARDALRHSFFTRDHLRR 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2296 425 Gene3D Transferase(Phosphotransferase) domain 1 147 418 - -
Ssu1g2296 425 CDD PKc_CLK 80 418 - -
Ssu1g2296 425 PANTHER KINASE AFC1 1 425 - -
Ssu1g2296 425 SMART serkin_6 93 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2296 425 ProSiteProfiles Protein kinase domain profile. 93 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2296 425 Gene3D Phosphorylase Kinase; domain 1 80 173 - -
Ssu1g2296 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Ssu1g2296 425 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 425 - -
Ssu1g2296 425 SUPERFAMILY Protein kinase-like (PK-like) 80 422 IPR011009 -
Ssu1g2296 425 Pfam Protein kinase domain 93 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2296 Ssu-Chr1 64846453 64849681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2296 98 418 Core Cell Cycle Gene Families AT1G76540 25.373 1.84e-27 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Ssu1g2296 Pkinase 2.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2296 K08287 - gmx:100808961 858.596