Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2287 ATGCCGCAGGATTCCTCCGAGCAAGACCTCGACGATCCCGACATCGAGTTCGTCGAGGTTGATCCCGCCGGTCGCTATGGTCGGTACAAGGAAGTTTTAGGGAAAGGGGCTTTCAAGAAAGTATATCGAGCGTTTGATGAGTTGGAAGGGATTGAAGTGGCTTGGAATCAGGTTAAGGTGGCGGATCTGTTGCGTAACTCTGAAGATTTGGAGCGACTTTATTCAGAGGTTCATTTGCTGAAGACTTTGAAGCATAAGAATATAATCAAGTTTTACAATTCATGGATTGACGCCAAGAATGAGAACATCAACTTCATTACTGAAATTTTCACCTCCGGAACATTGCATCAATACCGGAAGAAACATAAGCATGTTGATTTGAGAGCTTTGAAGAAATGGTCTAGGCAGATTTTGGAAGGCCTTTTATATCTTCACAGTCATAATCCACCGGTTATTCACCGAGACCTGAAGTGCGACAACATTTTTGTCAATGGGAATCAAGGGGAGGTGAAAATTGGTGATTTAGGATTGGCGGCTATCCTTCGGCAGGCCAATTCGGCTCACAGTGTCATAGGTACCCCTGAGTTCATGGCCCCAGAACTTTATGAAGAGGAATACAATGAGCTTGTTGACATCTATGCTTTTGGCATGTGCTTGCTAGAGTTGGTAACTGTTGAGTACCCATATGTTGAATGTTCCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATAAGGCCAGCATCGTTGGCAAAAGTGACAGATCTTGAAGTTAAAGCATTTATCGAAAAGTGTATTGCTGATGTATCTGAGCGGTTGTCTGCGAAGGACCTCTTGATGGATCCCTTTCTTCAGTCAGATTATGATAATGATAGTGTAGGTCGATCTTCAAAATCTCAAACCAATTCAGGAAATAATTCTCATAATCAAGCTATTGAAAATGCTGAGGATAATTCTATTGAGACAAGTAGGGAATTTACAGTGGAAGGTCAGAGGACAgataataatacaatatttttaaaattgcgaATTGCAGATTCCTCAGGTCTTCTCtctcaattttctttctttctttttatccaaagaGAGTATCTGTCTATTTGCTTTTTCATTGGTTCTGATGTTCATTTCTGTGTAGGTCATATTCGCAATATCcattttccttttgatattgAAGCAGACACTTCAACCTCTGTTGCTAGTGAAATGGTTGAGGAGTTGGAACTTACTGATCAAGATGTTACAGCTATTGCCAGGATGATTGATTCTGAAATTCGATATCACATTCCTAGTTGGAATACTAGTGAAACTCCTGTTGACAGTTATTGTCAAGATTCAGGCTGTACCTCTGAAACTAGGCCCGGGGCCTTTCCTATGACAAATGATTCCATTGCTTCTCCTGGTAGTCTTGCATTAGAAATATTACCTTCAGGTCGTAAGTACTGGTCAGACTCACCAAAGGGAGTTGGTAGAAACTCTCCATCTCAGCCTGGTACTTCACACTTGTTTGAAGCAGATGCAAATGCTGAGGAAGGCAGCCCAACTGCAAATGGTGATATTTCAGCTGATGATCAGATCTGTGTTGGTGATTGTAGTGCTGAGAAGGAATGTGATGAGACTGCTGATCCCCCTTTCAGTGAGAGAAGTATTACATCAGGAGCAACCGGTGAAAAATCTTCCCAGACAGAAATATCTGGAATTTGGAAGATTCTGAAATAG 1722 0.4019 MPQDSSEQDLDDPDIEFVEVDPAGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVADLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWIDAKNENINFITEIFTSGTLHQYRKKHKHVDLRALKKWSRQILEGLLYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECSNAAQIYKKVTSGIRPASLAKVTDLEVKAFIEKCIADVSERLSAKDLLMDPFLQSDYDNDSVGRSSKSQTNSGNNSHNQAIENAEDNSIETSREFTVEGQRTDNNTIFLKLRIADSSGLLSQFSFFLFIQREYLSICFFIGSDVHFCVGHIRNIHFPFDIEADTSTSVASEMVEELELTDQDVTAIARMIDSEIRYHIPSWNTSETPVDSYCQDSGCTSETRPGAFPMTNDSIASPGSLALEILPSGRKYWSDSPKGVGRNSPSQPGTSHLFEADANAEEGSPTANGDISADDQICVGDCSAEKECDETADPPFSERSITSGATGEKSSQTEISGIWKILK 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2287 573 MobiDBLite consensus disorder prediction 291 318 - -
Ssu1g2287 573 Coils Coil 306 326 - -
Ssu1g2287 573 Gene3D - 381 430 - -
Ssu1g2287 573 MobiDBLite consensus disorder prediction 546 567 - -
Ssu1g2287 573 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 6 357 - -
Ssu1g2287 573 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 379 520 - -
Ssu1g2287 573 MobiDBLite consensus disorder prediction 291 321 - -
Ssu1g2287 573 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 385 426 IPR024678 GO:0004674|GO:0005524
Ssu1g2287 573 MobiDBLite consensus disorder prediction 536 573 - -
Ssu1g2287 573 CDD STKc_WNK 25 285 - -
Ssu1g2287 573 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2287 573 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Ssu1g2287 573 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2287 573 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2287 573 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Ssu1g2287 573 SUPERFAMILY Protein kinase-like (PK-like) 29 286 IPR011009 -
Ssu1g2287 573 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 6 357 - -
Ssu1g2287 573 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 379 520 - -
Ssu1g2287 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2287 Ssu-Chr1 64606846 64610289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2287 17 433 MAP Kinase Kinase Kinase AT3G22420 50.214 3.47e-155 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Ssu1g2287 Pkinase 6.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2287 K08867 - gmx:100272204 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2287 1 64606846 64610289 Ssu1g2287 1 64606846 64610289 ECH