Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2286 ATGGCAATTTCTTCAGCAACAGCTTCCTCCAAATTCATACTATTCCCCCATGCGTCTTCCTCTTCATCCTCTTCCCTTAATTCCACACCCTTCCCTTCCAACACCCACAAACTAACCCCTCTCCCCTCCTCCTTCCTCCACCCCTCCACCGTCCTCCGCCGCACCCCCGCCACCACCACCCCGACCCCCCGCCGCCCCTTCACCGTCCGCGCGGCCCGCGGCAAATTCGAGCGCAAGAAGCCCCACGTGAACATCGGCACCATCGGCCACGTGGACCACGGCAAGACGACCCTCACCGCCGCCCTGACCATGGCCCTCGCCGCCCTCGGCAACAGCGCCCCCAAAAAATACGACGAAATCGACGCCGCCCCGGAGGAACGCGCCCGCGGCATCACCATCAACACGGCGACGGTGGAGTACGAGACGGAGAACCGCCACTACGCCCACGTGGACTGCCCCGGCCACGCGGACTACGTGAAAAACATGATCACCGGCGCCGCGCAAATGGACGGCGCCATCTTGGTGGTGTCCGGGGCGGACGGCCCCATGCCGCAGACCAAAGAACACATTCTCCTGGCCAAACAAGTGGGCGTCCCCAACATGGTGGTGTTCCTCAACAAACAGGACCAGGTCGACGACGAAGAACTCCTCCAGCTGGTCGAACTCGAGGTCCGCGAGCTTCTCTCCTCGTACGAGTTCCCCGGCGACGACATCCCCATCGTCTCCGGCTCCGCCCTCTTGGCTCTCGAGGCTCTCATGGCGAACCCTTCCATCAAGCGCGGCGACAACGAGTGGGTGGACAAAATCTACCGGCTCATGGACGAGGTCGACAGCTACATCCCCATTCCCCAGCGCCAGACGGACCTCCCTTTTCTCCTCGCCGTCGAGGACGTTTTCTCCATCACCGGGCGCGGCACCGTCGCCACCGGGCGCGTCGAGCGCGGCACCATTAAAGTCGGCGAAACGGTGGACCTCGTCGGTTTGAGGGAAACCCGGAACACGACGGTCACCGGCGTGGAAATGTTTCAGAAGATTCTGGACGAGGCGCTGGCTGGGGACAACGTGGGGCTGCTGCTCAGAGGGATTCAGAAGGCGGACATTCAGAGAGGGATGGTTTTGGCGAAGCCTGGGACGATTACTCCGCACACAAAGTTTGAGGCGATTGTTTATGTTTTGAAGAAGGAGGAAGGTGGGAGGCACTCGCCCTTCTTTGCCGGTTACAGGCCTCAGTTTTATATGAGGACCACCGATGTGACCGGCAAGGTGACGTCTATCATGAATGATAAGGATGAGGAGTCTAAGATGGTGATGCCCGGGGACCGTGTGAAGATGGTCGTCGAGCTTATTGTTCCTGTGGCCTGCGAACAGGGAATGAGGTTTGCGATTAGGGAAGGAGGGAAGACCGTTGGTGCCGGCGTTATCCAATCCATCATTGAGTGA 1440 0.6028 MAISSATASSKFILFPHASSSSSSSLNSTPFPSNTHKLTPLPSSFLHPSTVLRRTPATTTPTPRRPFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIPIVSGSALLALEALMANPSIKRGDNEWVDKIYRLMDEVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGTITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2286 479 Pfam Elongation factor Tu GTP binding domain 80 281 IPR000795 GO:0003924|GO:0005525
Ssu1g2286 479 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 121 136 IPR031157 -
Ssu1g2286 479 PANTHER ELONGATION FACTOR TU 26 479 - -
Ssu1g2286 479 Gene3D Translation factors 418 478 - -
Ssu1g2286 479 TIGRFAM small_GTP: small GTP-binding protein domain 83 215 IPR005225 GO:0005525
Ssu1g2286 479 Gene3D Translation factors 286 414 - -
Ssu1g2286 479 Gene3D - 72 283 IPR027417 -
Ssu1g2286 479 TIGRFAM EF-Tu: translation elongation factor Tu 72 479 IPR004541 GO:0003746|GO:0005525|GO:0006414
Ssu1g2286 479 CDD EF_Tu 81 283 IPR041709 -
Ssu1g2286 479 PRINTS GTP-binding elongation factor signature 201 210 IPR000795 GO:0003924|GO:0005525
Ssu1g2286 479 PRINTS GTP-binding elongation factor signature 164 175 IPR000795 GO:0003924|GO:0005525
Ssu1g2286 479 PRINTS GTP-binding elongation factor signature 148 158 IPR000795 GO:0003924|GO:0005525
Ssu1g2286 479 PRINTS GTP-binding elongation factor signature 84 97 IPR000795 GO:0003924|GO:0005525
Ssu1g2286 479 PRINTS GTP-binding elongation factor signature 128 136 IPR000795 GO:0003924|GO:0005525
Ssu1g2286 479 PANTHER ELONGATION FACTOR TU-RELATED 26 479 - -
Ssu1g2286 479 CDD EFTU_II 291 377 IPR033720 -
Ssu1g2286 479 Pfam Elongation factor Tu C-terminal domain 378 477 IPR004160 -
Ssu1g2286 479 CDD EFTU_III 380 474 - -
Ssu1g2286 479 Hamap Elongation factor Tu [tuf]. 71 479 IPR004541 GO:0003746|GO:0005525|GO:0006414
Ssu1g2286 479 MobiDBLite consensus disorder prediction 19 65 - -
Ssu1g2286 479 Pfam Elongation factor Tu domain 2 305 373 IPR004161 GO:0005525
Ssu1g2286 479 SUPERFAMILY Translation proteins 285 381 IPR009000 -
Ssu1g2286 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 306 IPR027417 -
Ssu1g2286 479 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 80 284 IPR000795 GO:0003924|GO:0005525
Ssu1g2286 479 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 378 478 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2286 Ssu-Chr1 64592958 64594397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2286 78 477 Eukaryotic Initiation Factors Gene Family AT5G60390 30.023 2.23e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2286 K02358 - gmx:100793431 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2286 1 64592958 64594397 Ssu1g2286 1 64592958 64594397 ECH
Ssu6g1437 6 23500458 23502068 Ssu1g2286 1 64592958 64594397 PCT