Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2284 ATGAGTGCTCCCATGGAGACGGAGCTCACAACCGACGAAAATGGCGCTGCTTCCCACCACTCTCTTCCCGAGGACAAAGTTCTTGTCCCTGTCGAGGTATGCCTAAAATCTTCAAGCACAGCTAGAATCGACGATGTCCGTTCCGCCGTTGAGGGgaTGCTTGAAAAGAGGAGTTTGAGCTACATCGATGGACCCATTCCGGTGCCTCCTGATGACACGTTTCTTGCAGATAACGTGCAGAGAATTTGCGTTTGCGGATGTGATACTGATGAAGGGATGCACAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCCGTTGTACATGTCTTTCAGCTTAGCGAGGAAGGACCATGTGAGGACATAAGCTCTGATGGCCGGTCTTCCAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAACGGCTATTACGTTATGCAGCAAGTGCTTTGCTCTTTACTGAAAAAGGGGTTGATCCATTCCTTGTTTCATGGAATCGCATAGTTCTGTTACATGGACCGCCTGGGACTGGAAAGACGTCTTTATGTAAAGCATTAGCTCAGAAATTATCAATTCGATTCAATTCGAGATACCCACAGTCCCAGCTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGAAAGCTGGTAGCGAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAGTCTAGTATTTGTATTGATTGATGAAGTCGAAAGCCTTGCTGCTGCTAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCTGATTCTATTCGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCAAATGTGATAATTCTAACCACGTCCAACATAACTGCCGCTATTGaCATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGCCCCCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCCTGCTTGCTGGAACTGATGCGTACAAGGATCTTGACTAGTTTACAGGATTGTAAGAATGTCATGCTGCCAAATTACGCTAGTGCAAAGGAGAGGTTGAACGCTCCAGATTTTCATGAGGGTGCTAAATTCATGCAACTGTGCAAGCAACTACTTGAAACTGCAGAGGCATGTGAGGGAATGAGTGGAAGATCTTTGAGAAAGCTTCCATTTTTGGCACATGCTGCACTTGCAAATCCTTTGGATTGCAACCCTATTAAGTTCTTATATACAATGATAGAAACGGCAAAGAGGGAGCGTTCTGAGCTTCCTGActga 1341 0.434 MSAPMETELTTDENGAASHHSLPEDKVLVPVEVCLKSSSTARIDDVRSAVEGMLEKRSLSYIDGPIPVPPDDTFLADNVQRICVCGCDTDEGMHNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGRSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFNSRYPQSQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESSLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLLELMRTRILTSLQDCKNVMLPNYASAKERLNAPDFHEGAKFMQLCKQLLETAEACEGMSGRSLRKLPFLAHAALANPLDCNPIKFLYTMIETAKRERSELPD 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2284 446 Pfam ATPase family associated with various cellular activities (AAA) 184 329 IPR003959 GO:0005524|GO:0016887
Ssu1g2284 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 415 IPR027417 -
Ssu1g2284 446 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 298 312 IPR001270 GO:0005524
Ssu1g2284 446 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 184 202 IPR001270 GO:0005524
Ssu1g2284 446 SMART AAA_5 180 332 IPR003593 -
Ssu1g2284 446 ProSitePatterns AAA-protein family signature. 302 321 IPR003960 GO:0005524|GO:0016887
Ssu1g2284 446 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g2284 446 MobiDBLite consensus disorder prediction 1 17 - -
Ssu1g2284 446 CDD AAA 182 330 - -
Ssu1g2284 446 Gene3D - 124 345 IPR027417 -
Ssu1g2284 446 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 20 443 IPR044539 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2284 Ssu-Chr1 64544173 64549713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2284 184 349 Calmodulin-binding Proteins AT3G56690 31.548 2.52e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2284 K22399 - gmx:100795009 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2284 1 64544173 64549713 Ssu1g2284 1 64544173 64549713 ECH