Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2274 ATGGAATCCAAACCCTCTCAAACTATCAAGCTCCTCTGCAGCTACGGCGGCAAGATACTCCTTCGCGCCACCGACGGCGAACTCCGTTACGTCGGCGGCCACACCAGAGTCCTCACCGTCGACCGTTCCATCTCGTTTTCAGAATTGATGGTGAAGCTCGGCGAGTTTTCTGGTTCGTCCGTGATCTTGAGGTGTCAGTTACCCAAGGGAGACTTGGAGACCTTGATCTCCGTCACCAACGATGAAGATCTCGCCAATATAATCGAAGAATACGATCGCGCGTCGTCGAAACTGGTTCATCCGTTGAAGATCAGAGCCGTTCTCTCGCCGCCGAAATCGTTGAAGAAGGTTTCGTCCGCTCCGTCGTCGGCGTCGTCGAGCGCCAGTCACTCTCCGTCCAGATCGCCTCACACCTCCGCTGAATCGCTGCCGCACGCGGCGGCGTATCGCATCAGCCGCCATAATCGGATGCCGCCGGCGCCGGTGCCGGTTGCGTATCCTATCGGCGTCCGTAACGGAACGGCGAAGGCGTGTTGCTACACGCAGTTCGATGGAAGCCCTAGGTTTCTGTATCGTGGACCTCACTGCAATAATTACTGCCACTGA 606 0.5693 MESKPSQTIKLLCSYGGKILLRATDGELRYVGGHTRVLTVDRSISFSELMVKLGEFSGSSVILRCQLPKGDLETLISVTNDEDLANIIEEYDRASSKLVHPLKIRAVLSPPKSLKKVSSAPSSASSSASHSPSRSPHTSAESLPHAAAYRISRHNRMPPAPVPVAYPIGVRNGTAKACCYTQFDGSPRFLYRGPHCNNYCH 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2274 201 Pfam PB1 domain 27 97 IPR000270 GO:0005515
Ssu1g2274 201 MobiDBLite consensus disorder prediction 114 142 - -
Ssu1g2274 201 MobiDBLite consensus disorder prediction 115 140 - -
Ssu1g2274 201 CDD PB1_UP2 12 108 - -
Ssu1g2274 201 PANTHER OS05G0427100 PROTEIN-RELATED 1 201 - -
Ssu1g2274 201 SUPERFAMILY CAD & PB1 domains 25 116 - -
Ssu1g2274 201 SMART PB1_new 23 111 IPR000270 GO:0005515
Ssu1g2274 201 Gene3D - 29 107 - -
Ssu1g2274 201 PANTHER PB1 DOMAIN PROTEIN 1 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2274 Ssu-Chr1 64422850 64423548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2274 9 96 MAP Kinase Kinase Kinase AT5G57610 48.864 3.75e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2274 - - gmx:100797123 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2274 1 64422850 64423548 Ssu1g2274 1 64422850 64423548 ECH
Ssu6g1427 6 23424069 23424774 Ssu1g2274 1 64422850 64423548 PCT