Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2273 ATGACGACTCGGTTCAAGAAGAACAGGAAGAAGAGGGGCCACGTGAGCGCGGGGCACGGCCGTATCGGGAAGCACCGGAAGCACCCAGGAGGGCGCGGTAACGCCGGCGGCATGCACCACCACCGGATCCTCTTCGACAAGTACCACCCCGGGTACTTCGGCAAGGTCGGCATGCGCTACTTCCACAAGCTCCGCAACAAGTTCCACTGCCCCATTCTCAACATCGACAAGCTCTGGTCCCTGGTCCCCCAAGACGTCAAGGACAAGGCCTCCAAGGACAACAAAGCGCCCCTGATCGATGTCACGCAGTTCGGCTACTTTAAGGTTTTGGGGAAGGGCGTTTTGCCTCAGAACCAGCCCGTTGTCGTGAAGGCCAAGCTCGTTTCCAAGATCGCCGAGAAGAAGATCAAGGAGGCCGGCGGCGCCGTTGTTCTCACCGCTTGA 444 0.5968 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFHCPILNIDKLWSLVPQDVKDKASKDNKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLVSKIAEKKIKEAGGAVVLTA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2273 147 Coils Coil 147 147 - -
Ssu1g2273 147 Hamap 50S ribosomal protein L15 [rplO]. 1 146 IPR030878 GO:0003735|GO:0006412|GO:0015934
Ssu1g2273 147 MobiDBLite consensus disorder prediction 1 35 - -
Ssu1g2273 147 ProSitePatterns Ribosomal protein L15 signature. 108 140 IPR001196 GO:0003735|GO:0005840|GO:0006412
Ssu1g2273 147 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 147 - -
Ssu1g2273 147 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 IPR021131 -
Ssu1g2273 147 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 147 - -
Ssu1g2273 147 Gene3D - 58 147 - -
Ssu1g2273 147 SUPERFAMILY Ribosomal proteins L15p and L18e 6 146 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2273 Ssu-Chr1 64388849 64389292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2273 1 147 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 88.435 6.32e-93 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2273 K02900 - gmx:100802235 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1422 6 23364256 23364696 Ssu1g2273 1 64388849 64389292 PCT