Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2270 ATGGCAGACGATAAAAAACACCTCATAAACTATCAAAATATTGTGGATAATCCCAGCACTGTTTGGAAAAGTGAAAACATCTTACGATTCTACCTTCCCCAATTTTTCTTCCTATTGCTTATCGTTGTCTCTGCCACCCGTTTTATACACCACATCCTCAGACCTTTCAATCAACCACATTTTGTTGCTGAATTTCTTgCGGGTTTACTGGTATGTCCACAATTAATCGAGGGAACCATGTTTTATAGTCTCGTGACACCTGCAAAAGCACTGCTTGGTATTGAGACGATGGCGCATGTGGGTCTCATCTACAATGTCTTCCTAACTGGCTTGGAGATGAACCTAGACACTGTCATACAAGCACGAAAGAAGGCCACAACCATTGCTATCGCAGGCACTCTCATTCCAATGGCCTTAGGGGCCACCATATATTCTTTGGCCCAAGCTCTCTACAAGACACCTAAAATTGACGCGCCACATTACGACTCACCCAGCGCATATTTATTCTGGGCTTTGGTTCTTAGCGTCACAAACTACCCCGTCCTCGCTCACATTCTTTCGGATCTCAAGATCCTCTACACGGGGCTCGGTAGAGTGGCCGTAACCGCGGCCATAATTAACGACTTCTACAATTGGGCGATGTTCGTGTTGCTGATTCCATTTGCCACTCACAGCGAAAAACCCTTTGTCTCGGTGGTCCTCACCATGGCTTTTGTCCTTTTCTGCTACTTCGTGCTGCGCCCTTTCCTCGTGCGGTTGATAGACAAAAGAACGGAAAAGAATGAGTGGGACAATTACCGGTTGGCGTATGTTCTCGTAGGAGTTTTCGCCTGTGCGCATGTCACTGAAATGCTTGGCACGCACTCCATTGTTGGGGCGTTGGTGTACGGTCTGATCCTCCCGCGTGGGAAATTTGCGGACATGTTGATGGAAAGGTCGGACGATCTTGTCTCTGTGTATTTGGCACCGTTGTTCTTTGTTGGCTGCGGCGTAAGATTCGACTGCCGTAGTTTCGTACCTCACAAATTGCTTAAGGTGGCGATAATCGTGCTCCTGTCGTGCGCCACAAAGATAGTAAGCACTATAATCGCTACAGGCTTCTATAGAATGCCTTTTCGCGATGGTGTGGCACTCGGAGCGCTTATGAACACCAAAGGCATCTTGCCATTAGTAATGCTAAACATTGCAAGTGACAGGAAGATTTTGAGTCGTGATTTCTATTCAATTATGGTATTTGCTAGTGTTCTGATGACTATACTAGTGTCTCCTACCATCAACTACATATACAAGCCAAAAAAGCAGTTTGAGAAAGATAAGCTAAGGACTATACAGAACTTGAGGGCTGATGCAGAGATCCGAGTTTTGGCTTGTGTTCACAACAGTCGCCAAGCCACAGGAATGATCAGCATCCTTGAAGCCTCTAGTGCCCCTAACGCTACCCCTTTAATCGCGTTTGCTCTTCAACTCATTGAGCTGAAAGGACGCGGCACTGCCTTTCTGGTTAACCAGAACAGCTCCCTCCAATCACAAGCGGACACGGATAGCATTACGGCTATTTTTGCAGAACTTGCACACGCTCACGCTAGCGTGGAGACTCTGGCTGCAGTGTCCTCCTACGAGACCATTCACAGGGACATTTACAACATAGCGGATGAGAAGCAAGCGTCCTTGATTCTCCTTCCCTTTCACAAGCAATCGAGCGCGGAGGGTGCCCTGGAGGAGACCAACGCCGCATTCAAAGAGATAAACCAAAATGTGATGCACCGTGCGCCGTGTTCTGTGGGGATCTTGGTCGATCGTGGACACGGGTCACTGTCCAAGACCAACTTGCACGTTACGGTGCTATTCATTGGTGGGCCCGATGACCGCGAAGCCTTGGCTATTGCTTGGAGAATGGCGAAGCATCCGGGGATCCATCTTTCCATGGTGCATATTCTCCTGTTTGGGAAAGTTGCTGAGGTGGATCGTACAGTAGCCAACGATGAAGCTCACGGGCTGTTGTCTACGGTGCTGGACAGTAGACAGGAGAAGGAGTTGGATGAAGAGTACGTGAGTATGTTTAGGCTCATGGCAGTGAATAACGAGGATTCCATAACTTATGCTGCGAAGGAAGTGCACACTGGGGATGATGTTCCGTTGGTGCTTAATGAATTGGACAGAGGGGGTTATGATTTGTATGTTCTGGGACATGGAAAAGGAAGGAACTCTATGGTGTTGTCAAATTTGTTGGAATGGACCGATTGCCCTGAACTTGGGGTTATAGGGGACATGCTCGCGTCGAATAGTTTTGGTTCGCGCTCTTCGGTGCTTGTGGTGCAGCAGTATGGGTTCGGGGGAACCAACTTTAGGACTTGCAACCAAGGGAATTCAAACAATGCGGATGTTGAGTCCCTTTTTGGAAAGGCTGAGTAA 2412 0.4793 MADDKKHLINYQNIVDNPSTVWKSENILRFYLPQFFFLLLIVVSATRFIHHILRPFNQPHFVAEFLAGLLVCPQLIEGTMFYSLVTPAKALLGIETMAHVGLIYNVFLTGLEMNLDTVIQARKKATTIAIAGTLIPMALGATIYSLAQALYKTPKIDAPHYDSPSAYLFWALVLSVTNYPVLAHILSDLKILYTGLGRVAVTAAIINDFYNWAMFVLLIPFATHSEKPFVSVVLTMAFVLFCYFVLRPFLVRLIDKRTEKNEWDNYRLAYVLVGVFACAHVTEMLGTHSIVGALVYGLILPRGKFADMLMERSDDLVSVYLAPLFFVGCGVRFDCRSFVPHKLLKVAIIVLLSCATKIVSTIIATGFYRMPFRDGVALGALMNTKGILPLVMLNIASDRKILSRDFYSIMVFASVLMTILVSPTINYIYKPKKQFEKDKLRTIQNLRADAEIRVLACVHNSRQATGMISILEASSAPNATPLIAFALQLIELKGRGTAFLVNQNSSLQSQADTDSITAIFAELAHAHASVETLAAVSSYETIHRDIYNIADEKQASLILLPFHKQSSAEGALEETNAAFKEINQNVMHRAPCSVGILVDRGHGSLSKTNLHVTVLFIGGPDDREALAIAWRMAKHPGIHLSMVHILLFGKVAEVDRTVANDEAHGLLSTVLDSRQEKELDEEYVSMFRLMAVNNEDSITYAAKEVHTGDDVPLVLNELDRGGYDLYVLGHGKGRNSMVLSNLLEWTDCPELGVIGDMLASNSFGSRSSVLVVQQYGFGGTNFRTCNQGNSNNADVESLFGKAE 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2270 803 Gene3D - 447 749 - -
Ssu1g2270 803 Pfam Sodium/hydrogen exchanger family 40 424 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu1g2270 803 Gene3D - 33 438 IPR038770 -
Ssu1g2270 803 PANTHER CATION/H+ EXCHANGER 3 19 787 - -
Ssu1g2270 803 PANTHER CATION/H + ANTIPORTER 19 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2270 Ssu-Chr1 64354769 64359123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2270 21 775 Antiporter Super Family AT2G13620 38.065 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2270 - - gmx:100818455 1239.94