Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2266 ATGGCATCATCCAGCTCCTACAATTGTCCATGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCCTTCCAGGGTGCATCTTTGCACCTTACTTCCCACCAGAAGAACCCCAAAAGTTCGCCAACGTGCACAAGATCTTCGGTGCTAGCAATGTGACCAAGCTCCTCAACGAACTCCTCCCTCACCAAAGGGAAGATGCAGTGAACTCCCTTGCCTATGAGGCTGAGGCACGCGTGAGAGACCCCGTTTATGGCTGCGTAGGTGCCATCTCTTTCCTTCAGAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATTCTGCCAATGCTGATCTCCTTCGCTATGCTTGCAATGACATGCCTCCACCTTCTCTTTCTGTGCCACCGCAATGA 387 0.5116 MASSSSYNCPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYACNDMPPPSLSVPPQ 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2266 128 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Ssu1g2266 128 PANTHER ELONGATED PETIOLULE 1 1 122 - -
Ssu1g2266 128 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 122 - -
Ssu1g2266 128 Coils Coil 89 116 - -
Ssu1g2266 128 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2266 Ssu-Chr1 64198060 64198446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2266 2 114 AS2 family AT5G63090 90.265 2.88e-74 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu1g2266 LOB 1.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2266 - - gmx:100799774 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1416 6 23222415 23222975 Ssu1g2266 1 64198060 64198446 PCT