Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2256 ATGAGTATGGGTATCAACATAAAGGGGCAAATAGAGAGGGTGAATGGGAAGGAACTGAGTTACATTGAATTTGTGGAGAGATATATGGAGAAGAACCAGCCTGTGGTGCTCACTGGGCTAATGGACCCCCATCATTGGAGGGCTTCCACTGACTGGGTCACACTTCAGGGCCAACCCAACTTTCAATTTTTCTCCTCTCATTTTGGGGCTTCCAAAGTTCAGGTTGCAGATTGTGACACCAGGGAATTCACTGATCAGAAAAGAGAGGAGATGTTGGTCTCGGATTTTATGGGACGTTGCCTTCAACTTGAGGCTTCTCCTGTTCAGTGTAATAATGAAAATCGTGCAAGTAATGGTCCCTCTGTATCTGTACCGTATTTGAAGGATTGGCATTTTGTTAAGGAGCATCCTGAATATGGAGCATATGTCACTCCAATGTTCTTTTGTGATGACTGGCTCAACCTGTATCTTGACAACTTCAGAATCCATATTGATTCTGACACACACCAACCAAATGAGGAAATATGTTGCTCTGACTATCGATTTGTTTACATGGGAGTGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCTATAGCTGGTCAGCAAATGTCTGCGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTGTATTTGACAGGAATATGAAAAATTGTGTATATAATATCTTTGATGAAGCATCAAACTCAAAATTTCCTGGTTTTAGCAAGGTTTGTATTTGTATGCAGGCTATCTGGTTAGAATGCACACAAGATGCTggtgaaattatatttgttcCTAGCGGATGGTATCATCAAGTTCATAATTTAGAGGATACGATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTATGCCAGCGCAATCTTGCTGCTAACACAGGTATGAATTTTTATGACTTCTTTACCTTCATGTCATGCTTCACGTTGGCCAACTTGGTGTTGCTTCGTTATATAAATAGAAGATATGGAAGTACCACTGGAATTTCATCAATAATAGCTCAGCATTTATCCATGAATCTTGGGTGTTTAAGGAAGATTGCATCAGAGATGAAACACATGCATGCTCTAGAAGGAAATCACAATTGCGTCGTGGATATGATCAAAGCATTTGAAGATCCTAGGTTTTCCAAATTATGCATGCATGTAGGAAGAACATATGTAATGATACATGAACAATCTTACTTGTCCTCTTATTTTGAGAGCACTTCAATGAGTGATTTGGTGGACCTCAATGATATGAAAGCATACACATCTCAGATCTACACACCTGAAGATCTCATTAAATTTATAGACAATGGTGTTGCAGAACTGGGTGACTGTTCCATTGAGCCATCTGTACTCCATGTTGTTTGA 1494 0.3929 MSMGINIKGQIERVNGKELSYIEFVERYMEKNQPVVLTGLMDPHHWRASTDWVTLQGQPNFQFFSSHFGASKVQVADCDTREFTDQKREEMLVSDFMGRCLQLEASPVQCNNENRASNGPSVSVPYLKDWHFVKEHPEYGAYVTPMFFCDDWLNLYLDNFRIHIDSDTHQPNEEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWLFLDPSQCHLVFDRNMKNCVYNIFDEASNSKFPGFSKVCICMQAIWLECTQDAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFMSCFTLANLVLLRYINRRYGSTTGISSIIAQHLSMNLGCLRKIASEMKHMHALEGNHNCVVDMIKAFEDPRFSKLCMHVGRTYVMIHEQSYLSSYFESTSMSDLVDLNDMKAYTSQIYTPEDLIKFIDNGVAELGDCSIEPSVLHVV 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2256 497 Gene3D Cupin 3 296 - -
Ssu1g2256 497 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 8 483 - -
Ssu1g2256 497 Pfam Cupin-like domain 23 294 IPR041667 -
Ssu1g2256 497 SUPERFAMILY Clavaminate synthase-like 7 323 - -
Ssu1g2256 497 ProSiteProfiles JmjC domain profile. 125 311 IPR003347 -
Ssu1g2256 497 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 8 483 - -
Ssu1g2256 497 SMART cupin_9 147 311 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2256 Ssu-Chr1 63975985 63979777 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2256 9 303 Glycosyltransferase AT1G78280 24.242 3.49e-16 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu1g2256 Cupin_8 1.4e-19 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2256 - - gsj:114409851 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2256 1 63975985 63979777 Ssu1g2256 1 63975985 63979777 ECH