Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2246 atggaGAACTACCTCTACGACTTTCACTGTTCAGCCACTTACTCAGATTCAGACCAGTCATCAATGGCTCCTCCTCCGCCGAGTACATCTGTCTTTGGAAAGGAGGAGGATGTTTCAAAAGTACTTCGTGCTAAAGTTGCTTCTCATCCTCTATTTCCTCACCTCCTCCATGCCTACATCGATTGCCACAAGGTGGGAGCGCCGCAAGATGTGGCACACCTATTAGAAGAAATCAAAGGAGAGAATACTGGGGTGTGTCAGATACCTGGTTTCTTGGGTGCTGATCCCGAGCTCGATGCTTTCATGGGAACGTTTTGCGATTTATTGGTGAAGTACAAATCGGATCTTTCAAGGGCCTTTAACGAGGCAACCATGTTCCTCAGCCAAATGGAAACACAGCTTCACTCCATCTGCAACGGCCTTTCTGCCACAAACAACACTTCTCCTCAACCTgATGAAGTTACTGGATCATCCGGAAAAGATTTTAGTAGGAAGGAGAAAGAGGCAATAGAGTGTAAGAGGATAAATGAAGTTCGAGAGCTGAAGGATAATCTTCTACGTAGATATAGCAGTTACATTACTAATCTGAAGCATGAATTttccaaaaagaagaagaaagaaaaactaccAAAAGAAGCAAAGCAAATCTTACTTGCATGGTGGAATATTCACTTTAAATGGCCATACCCAACGGAAGCGGATAAGCTTACCTTAGCTGAATGGACTGGTTTAGACCAGAAGCAAGTAAATAATTGGTTTATAAACCAAAGGAAGCGCCATTGGAAACCAACGGAGGAAATGCACGCTGCAATTTTGGATGGTCTCTATGGACCCCTGCATGAGTGA 846 0.4232 MENYLYDFHCSATYSDSDQSSMAPPPPSTSVFGKEEDVSKVLRAKVASHPLFPHLLHAYIDCHKVGAPQDVAHLLEEIKGENTGVCQIPGFLGADPELDAFMGTFCDLLVKYKSDLSRAFNEATMFLSQMETQLHSICNGLSATNNTSPQPDEVTGSSGKDFSRKEKEAIECKRINEVRELKDNLLRRYSSYITNLKHEFSKKKKKEKLPKEAKQILLAWWNIHFKWPYPTEADKLTLAEWTGLDQKQVNNWFINQRKRHWKPTEEMHAAILDGLYGPLHE 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2246 281 ProSiteProfiles 'Homeobox' domain profile. 200 263 IPR001356 GO:0003677
Ssu1g2246 281 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 31 280 - -
Ssu1g2246 281 CDD homeodomain 215 263 IPR001356 GO:0003677
Ssu1g2246 281 SMART HOX_1 202 267 IPR001356 GO:0003677
Ssu1g2246 281 Gene3D - 197 271 - -
Ssu1g2246 281 SMART KNOX2_2 88 139 IPR005541 GO:0003677|GO:0005634
Ssu1g2246 281 Pfam KNOX2 domain 93 138 IPR005541 GO:0003677|GO:0005634
Ssu1g2246 281 Pfam KNOX1 domain 42 82 IPR005540 GO:0003677|GO:0005634
Ssu1g2246 281 SMART KNOX1_2 40 84 IPR005540 GO:0003677|GO:0005634
Ssu1g2246 281 SMART ELK_2 180 201 IPR005539 GO:0003677
Ssu1g2246 281 SUPERFAMILY Homeodomain-like 201 272 IPR009057 -
Ssu1g2246 281 ProSiteProfiles ELK domain profile. 180 200 IPR005539 GO:0003677
Ssu1g2246 281 Pfam ELK domain 180 201 IPR005539 GO:0003677
Ssu1g2246 281 Pfam Homeobox KN domain 220 259 IPR008422 GO:0003677|GO:0006355
Ssu1g2246 281 ProSitePatterns 'Homeobox' domain signature. 238 261 IPR017970 GO:0000981|GO:0006355
Ssu1g2246 281 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2246 Ssu-Chr1 63689306 63698705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2246 5 277 Homeobox Transcription Factor Family AT1G23380 46.749 1.12e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ssu1g2246 KNOX2 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2246 - - ccaj:109811765 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2246 1 63689306 63698705 Ssu1g2246 1 63689306 63698705 ECH