Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2237 ATGCAGAGCGCGGCTTTCActttctctccctccctccctctccGAACCCCTTCCCTCAACCCCTTGAGGCCCTCACTTGCCCTCTGTCTCTCCGCAAACGCCAACAGCCACGAAGGCGTAAACTCCAATGGCGTCTCTTCCACTTCTTTCACTCGCCGATCTTGGACCCTCCCTCCCTCCTCTTCATTTAAGTTCAGGCCCTTACCTTTTTCCCCTTCACCTCCCCGAGCCGCTGAAAACACCGTCCCCGAAAGCGCCCCCGCCGGCGATGCGCTTTTCAAAACTCTCGAACTCGGCTCCTTGTTTGGCCTCTGGTACCTCTTCAACATCTACTTCAACATCTACAACAAACAGGTGTTGAAGGCGTGTCATTTTCCAGTGACTGTGACTGTTGTTCAATTTGCCGTTGGGACTGTGCTTGTGGCGTTAATGTGGGGTTTGAATCTCTACAAGAGGCCGAAAATCAGTGGTGCTATGCTTGGAGCGATTTTGCCGCTGGCTGTGGTGCATACTTTGGGGAATCTTTTCACCAATATGAGTCTTGGGAAGGTGGCTGTGTCTTTCACTCACACGATCAAGGCCATGGAGCCTTTCTTCTCGGTGGTCCTTTCTGCCATGTTCCTTGGAGAGATGCCTACACTGTGGGTGGTTGGTTCCCTTGTGCCTATTGTTGGTGGAGTTGCACTGGCGTCTGCTACTGAGGCCTCTTTCAATTGGGCTGGATTTTGGAGTGCAATGGCATCCAATGTGACAAATCAATCTCGTAATGTTCTTAGCAAAAAGGTCATGGTTAAGAAAGAGGATTCTATGGACAACATTACCCTCTTCTCTATAATAACAGTAATGTCCTTCTTCTTGTTAGCACCTGTGGCTGTCTTCATGGAGGGTGTCAAATTTACCCCTGCTTACTTGCAATCTGCTGGGTTAAATGTTAGACAAGTTTACATCAGATCTCTTCTTGCTGCACTCTGTTTCCATGCATATCAGCAAGTTTCTTATATGATATTGCAAAGGGTATCACCTGTTACCCACTCGGTGGGCAATTGTGTGAAGCGGGTTGTGGTCATTGTGAGCTCTGTCATCTTCTTCCAGACACCTGTCTCACCTGTGAATGCTTTTGGGACTGCTATAGCTCTTACTGGCGTTTTCCTCTATTCGAGGGTGAAGCGAATTAAGGCAAAGCCAAAAACAGCTTAA 1197 0.4754 MQSAAFTFSPSLPLRTPSLNPLRPSLALCLSANANSHEGVNSNGVSSTSFTRRSWTLPPSSSFKFRPLPFSPSPPRAAENTVPESAPAGDALFKTLELGSLFGLWYLFNIYFNIYNKQVLKACHFPVTVTVVQFAVGTVLVALMWGLNLYKRPKISGAMLGAILPLAVVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVVLSAMFLGEMPTLWVVGSLVPIVGGVALASATEASFNWAGFWSAMASNVTNQSRNVLSKKVMVKKEDSMDNITLFSIITVMSFFLLAPVAVFMEGVKFTPAYLQSAGLNVRQVYIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPVNAFGTAIALTGVFLYSRVKRIKAKPKTA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2237 398 PANTHER SOLUTE CARRIER FAMILY 35 95 371 - -
Ssu1g2237 398 Pfam Triose-phosphate Transporter family 97 386 IPR004853 -
Ssu1g2237 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 143 231 - -
Ssu1g2237 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 310 389 - -
Ssu1g2237 398 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 96 396 IPR004696 GO:0016021|GO:0022857|GO:0055085
Ssu1g2237 398 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 95 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2237 Ssu-Chr1 63522692 63526500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2237 1 398 Antiporters AT5G33320 72.155 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2237 K15283 - gmx:100804563 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2237 1 63522692 63526500 Ssu6g1385 6 22771553 22780469 ECH
Ssu1g2237 1 63522692 63526500 Ssu1g2237 1 63522692 63526500 ECH
Ssu6g1385 6 22771553 22780469 Ssu1g2237 1 63522692 63526500 PCT