Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2236 ATGGATCTTGAGACAATGCTCAAAGAAACCTATGTGTCACAGCCAATGCATTTACAAGAAAGCTGCTTGCAACCTAGCATGAGAGATATGCTTCCTTCTGGGAATCCCTCATCTCATGGATTCATGAAAGATTTTCACCATATTGATCAGTTTCACGTGAATGACTCctcatccaatccaatccaaactccAAATTTTGATACTTTTGACAATTTCTCCTTTATTGGTTCATCACCTTTTGATGTTTACGAGTGCAAGCCTTTTGTGGAGAATAGCGATAGGCATGCTCAAGTTATGGACAATTTCCTATATGGAAATTATAGCTTGAACCTCCCTCAAAGGAATCAACTAGATGTGATGGCTACAAATCaaagttttttgacttttaattcTCAACAAACCAAGCCCGCAAATTTTGTTGTACCAGATGAAGTTTCGAGCATATCCCCGGTGAATTATTACAAAAGAGTTGGCgtgaacaaaaataataaatcctaTCCAACCACTAGAAGGACATACAAAGTTCGTAAGAAGTCCAACATAGTAAAGGGACAATGGACAATAGAAGAAGATGGGTTGTTGATTCAACTGGTGGAACAATATGGATTGAGGAAGTGGTCTCATATTTCTAAGGTATTGCCCGGAAGAATTGGAAAACAGTGCAGAGAGAGATGGCATAACCATTTGAGGCCTGACATTAAGAAGGACAGATGGACTGAAGAAGAGGATAAAATACTAATCCATGCTCATGCAGAGGTAGGAAATAAATGGGCAGAGATTGCTAAAAGGTTGTCAGGAAGAACTGAGAACTCAATCAAAAACCATTGGAATGCAACCAAGAGAAGACAATATTCCAAAAGAAAGTGTCGCTCTAAGTACCCTAGAGGCACTCTTCTGCAAGAGTATATCAAGAGCTTGAACTTAGACAAGAACCCTCCAGTAGACTATAGGAGAAAATCTTCTGCCAATTATGCCAGTGCACTCAAAAACAAAACTAGCACAAGCAAAGTCATAGCACCAGCTCTGCCCCAGATAGCATATCAATTTTGTGCCACTGATTGCTTGTCAccaaattatgattttaatgtgGGCCCAGATTTTTTCTTTGGTGAGAATTTGTTTGAAGGAGGATGTAGTATTGATTCTCTTCTAGATGATGTGCCTTGTGCTCCTCCTATGGGTAAGGAAGATTTTGAAGGAACAATGCAATGTGATCTTATAATGGAGGGGAAACATTGTGATCAGGGAGGAATGAAGTGTGCttctgtttttaatatcaatgaGAATCATGTTGAGACAGAGATGCCACTAGAGAGGTTGGAGGTTGGAGTTAAGAAGGagttggatttggttgagatgATGTCTCAGATTAATAATGGAATTGTTCATGTGTGA 1395 0.3649 MDLETMLKETYVSQPMHLQESCLQPSMRDMLPSGNPSSHGFMKDFHHIDQFHVNDSSSNPIQTPNFDTFDNFSFIGSSPFDVYECKPFVENSDRHAQVMDNFLYGNYSLNLPQRNQLDVMATNQSFLTFNSQQTKPANFVVPDEVSSISPVNYYKRVGVNKNNKSYPTTRRTYKVRKKSNIVKGQWTIEEDGLLIQLVEQYGLRKWSHISKVLPGRIGKQCRERWHNHLRPDIKKDRWTEEEDKILIHAHAEVGNKWAEIAKRLSGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQEYIKSLNLDKNPPVDYRRKSSANYASALKNKTSTSKVIAPALPQIAYQFCATDCLSPNYDFNVGPDFFFGENLFEGGCSIDSLLDDVPCAPPMGKEDFEGTMQCDLIMEGKHCDQGGMKCASVFNINENHVETEMPLERLEVGVKKELDLVEMMSQINNGIVHV 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2236 464 Pfam Myb-like DNA-binding domain 235 277 IPR001005 -
Ssu1g2236 464 Pfam Myb-like DNA-binding domain 183 229 IPR001005 -
Ssu1g2236 464 SUPERFAMILY Homeodomain-like 180 276 IPR009057 -
Ssu1g2236 464 CDD SANT 186 229 IPR001005 -
Ssu1g2236 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 234 284 IPR017930 -
Ssu1g2236 464 SMART sant 182 231 IPR001005 -
Ssu1g2236 464 SMART sant 234 282 IPR001005 -
Ssu1g2236 464 Gene3D - 182 234 - -
Ssu1g2236 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 178 233 IPR017930 -
Ssu1g2236 464 ProSiteProfiles Myb-like domain profile. 230 280 IPR001005 -
Ssu1g2236 464 Gene3D - 236 296 - -
Ssu1g2236 464 PANTHER BNAC03G62830D PROTEIN 130 309 - -
Ssu1g2236 464 PANTHER MYB PROTEIN-RELATED 130 309 - -
Ssu1g2236 464 CDD SANT 237 280 IPR001005 -
Ssu1g2236 464 ProSiteProfiles Myb-like domain profile. 178 229 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2236 Ssu-Chr1 63507684 63509459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2236 73 388 MYB Transcription Factor Family AT4G18770 48.424 2.71e-93 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu1g2236 Myb_DNA-binding 7.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2236 K09422 - gmx:102662267 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2236 1 63507684 63509459 Ssu6g1382 6 22756241 22757125 ECH
Ssu1g2236 1 63507684 63509459 Ssu1g2236 1 63507684 63509459 ECH
Ssu1g2236 1 63507684 63509459 Ssu6g1382 6 22756241 22757125 PCT