Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2235 ATGGAAGAAACATTTGTTCCCTTGCGTGGGATTAAGAATGACCTCAAAGCGAGAATTATGTGCTACAGACAAGATTGGACCAGTGGATGCCAAGCGGGTAGCAGGATCCTTGCCCCAActacatacatattttttgcTTCTGCAATTCCTGTTATTTCTTTTGGGGAGCAACTGGAGAGAAATACTGATGGAAGTCTCACTGCTGTTCAGACTCTTGCATCAACGGCACTCTGCGGTATTATCCACTCAATCATTGGAGGGCAGCCTCTCCTCATACTAGGCGTAGCCGAGCCAACAGTTCTGATGTATACATTCATGTATAACTTTGCTAAGGATCGCAATGATTTGGGACACAAACTATTCCTACCTTGGACTGGATGggtGTGTGTTTGGACTGCCCTGTTGCTCTTCTTGCTGGCCATTCTTGGTGCATGCTCCATAATCAATAGATTCACACGCCTTGCTGGTGAATTATTTGGTCTGCTAATTGCAATGCTCTTTATGCAGCAGGCTATAAAGGGACTTGTGGAAGAGTTTGGTGTGCCCAAGAACCGGAGAGAAGGCACCAATCAGATTGCACTCCAATCATCTTGGCTGTTTGGCAATGGAATGTTTGCTTTGGTTTTATCATTTGGTCTTCTTTTTACTGGTCTACAAAGCCGCAAAGCTAGATCCTGGCGTTACGGGACAGGTTGGCTACGGGGATTTATTGCTGATTATGGAGTCCCACTAATGGTTCTCATATGGACTGCTGTGTCTTACATACCAGTCAATAAGGTTCCAAAGGGAATCCCTAGGCGACTTTTCAGTCCAAACCCATGGTCTCCTGGTGCATACTCAAATTGGACTGTTGTCAAGGAAATGTTGGATGTGCCCCCCTTATATATTGTTGGAGCATTTGTACCAGCAACTATGATTGCTGTGCTTTACTACTTTGATCATAGTGTTGCATCACAACTTGCTCAGCAGAAGGAGTTCAATCTAAGAAAACCCTCATCTTATCATTATGACTTGCTGCTCTTGGGCTTTTTGACCATATTATGTGGGCTTATTGGAATTCCTCCTTCCAATGGTGTGATTCCACAATCTCCAATGCACACAAAGAGCTTAGCTACTCTAAAACAtcagCTATTACGGAATAAGCTTGTATCTACTGCTCGAAAAAGCATGCGGAAAAATGTTAACTTGAGTCAGTTATACCAAAGTATGAAAGAAGCATATGATGGAATGCAGACTCCATTGGTTCCTCAAATGCCACCCACCCTGGGGCTGAGAGAACTGAAGGAATCTACTATTGAACTGGCTTCAACCCACGGATACATTGATGCCCCTGTTGATGAGGTGGTGTTTGATGTGAATAAGGATGTTGATGACCTTTTGCAAGTTGAAGTTAAAGAGCAGCGCCTCAGCAATCTACTGCAGGCATTGATGGTTGGGGCTTGTGTTGCTGCTATGCCCGTTTTGAAGAAGATACCAACTTCAGTGCTTTGGGGTTATTTTGCCTTCATGGCAATTGAAAGCTTGCCAGGAAATCAGTTTTGGGAGAGAATATTGTATCTTTTCACTGCTCCAAGTCGAAGATACAAACTGCTGGAGGAATACCATGCCACCTTTGTTGAGACCGTGCCCTTCAAAACAGTTGCCATGTTTACTGTGTTCCAGACAGTATACTTGCTTCTCTGCTTCGGCATAACCTGGATACCAATTGCTGGGGTCCTTTTCCCATTGTTAATCATGCTTCTTGTCCCAGTACGGCAATATTTTCTTCCAAAGTTTTTCAAAGGTGTGCATCTTCAAGAGTTGGACGCAGCAGCATATGAGGAAGCTCCTGCCATTGCTTTCAACATGTCCTTTGACGGTCCAAGTAGCCAGGCACCAACAGTCAATATCAGTGGTGGGGAAATTCTTGATGAAATTATCACGAGGAGTCGCGGTGAGATACGCCGCACTCAAAGCCCCAAAACAACAAGTTCAACTCCAACTTCAACAGGAGATACAAGAGCAGCTAATAGCCCTCAGATAGTACGAAGGATTCCCAGCCCTCGAGTAACTGAATTGAGAGGGGAAAGCAGCCTGAGACCAACTGGGAAGGAGACCAAGTTAATGCAAACACCTAGTCCACGGTCATCAGCCCTTGGAAATGTTACCAAAGGTTCGCCTTCAAGCTAA 2169 0.4426 MEETFVPLRGIKNDLKARIMCYRQDWTSGCQAGSRILAPTTYIFFASAIPVISFGEQLERNTDGSLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVLMYTFMYNFAKDRNDLGHKLFLPWTGWVCVWTALLLFLLAILGACSIINRFTRLAGELFGLLIAMLFMQQAIKGLVEEFGVPKNRREGTNQIALQSSWLFGNGMFALVLSFGLLFTGLQSRKARSWRYGTGWLRGFIADYGVPLMVLIWTAVSYIPVNKVPKGIPRRLFSPNPWSPGAYSNWTVVKEMLDVPPLYIVGAFVPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVSTARKSMRKNVNLSQLYQSMKEAYDGMQTPLVPQMPPTLGLRELKESTIELASTHGYIDAPVDEVVFDVNKDVDDLLQVEVKEQRLSNLLQALMVGACVAAMPVLKKIPTSVLWGYFAFMAIESLPGNQFWERILYLFTAPSRRYKLLEEYHATFVETVPFKTVAMFTVFQTVYLLLCFGITWIPIAGVLFPLLIMLLVPVRQYFLPKFFKGVHLQELDAAAYEEAPAIAFNMSFDGPSSQAPTVNISGGEILDEIITRSRGEIRRTQSPKTTSSTPTSTGDTRAANSPQIVRRIPSPRVTELRGESSLRPTGKETKLMQTPSPRSSALGNVTKGSPSS 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2235 722 Pfam HCO3- transporter family 462 552 IPR011531 GO:0006820|GO:0016021
Ssu1g2235 722 Pfam HCO3- transporter family 8 180 IPR011531 GO:0006820|GO:0016021
Ssu1g2235 722 Pfam HCO3- transporter family 204 375 IPR011531 GO:0006820|GO:0016021
Ssu1g2235 722 PANTHER ANION EXCHANGE PROTEIN 1 707 IPR003020 GO:0005452|GO:0006820|GO:0016020
Ssu1g2235 722 MobiDBLite consensus disorder prediction 650 670 - -
Ssu1g2235 722 PANTHER BORON TRANSPORTER 2-RELATED 1 707 - -
Ssu1g2235 722 MobiDBLite consensus disorder prediction 642 722 - -
Ssu1g2235 722 MobiDBLite consensus disorder prediction 696 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2235 Ssu-Chr1 63473014 63477590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2235 1 697 Antiporters AT3G62270 74.462 0.0 1053
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2235 K24194 - gmx:100793554 1345.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2235 1 63473014 63477590 Ssu1g2235 1 63473014 63477590 ECH
Ssu6g1380 6 22718636 22723332 Ssu1g2235 1 63473014 63477590 PCT