Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2220 ATGGCCATCAGAGGCGTCAATTTCAAATGGTTCGATGGCTTTTTCTTGTCCATGCTCGTCACCAGCATAGCTATCGTGGCAGTTAATTGGGAGCGGTACCAATCTTGTACATACCCTTTGCACATATGGACTGTGGTTGACTACGCTACTATTTTCACTTTCCGGCTTTTGATGTTTGTTGATGATGGGCTTGCTTCGGGAATGGGTTTAGATTTTGGGTGGCCGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTACTTACAATCCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACATTAATTGGTACCCTGTGGTTCAGCAACACTAAAATCTGCTTGCCTGGAGGGGGTCAGAAATGGGGCTTCCTTATCTGGTTAGTTTTTAGCTACAGTGGACTCGTTTCTATTGCTTGCATGGCAATGGGGAAGTGGTTGAAACGAAGACAAGCACACTTGTTAGGTGCTCAAGAGGGTATCCCTGTATCAGCATTTGGGGTTCTAGTTGAAATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACTAGGAGCATAGCCCAAGATGCTGCATATCATCCTGGACTGTACCTAACTTCAACCCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCATCGTTCAGGTTAAATGCTGTTCCTACTAATTGCAGTGAATGCCTCATCTGCTTAGAAGAGTTCCATGTAGGGAATCAGGTCCGTGGCCTGCCCTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGGCTTAATGTGAATTGTCCTCGCTGCCGTTGCTCTGTTTTTCCTAATCTTGATCTTAGTGCTCTGTCCAATATCCAATCCGAGTCTGAACAGTCTTCTGCCACTGCTGTGACAAGCAGACATGTGACAAACCAAGCTTCTAGTCAGAGTTACCTGTTGAGATTACAGGGGCTTCTCCGCCCAGTATGTGCTGAAATTGCAGGGCCAGTTGGTGAGACAGACAATGCTTTGGAAAATGCTGAAAATGGTGTTGGACCTGTCGTGGCTCAAAATCCGTCAACTGGAGATCAGGCCACTTCCGTTAGTCTTTCCTCTGCACAAAATTAG 1122 0.4599 MAIRGVNFKWFDGFFLSMLVTSIAIVAVNWERYQSCTYPLHIWTVVDYATIFTFRLLMFVDDGLASGMGLDFGWPQRYARFCGRVVVLTILALLLYPFLWAWTLIGTLWFSNTKICLPGGGQKWGFLIWLVFSYSGLVSIACMAMGKWLKRRQAHLLGAQEGIPVSAFGVLVEMIRVPDWAFEAAGQETRSIAQDAAYHPGLYLTSTQREAVEALIQELPSFRLNAVPTNCSECLICLEEFHVGNQVRGLPCAHNFHVECIDEWLRLNVNCPRCRCSVFPNLDLSALSNIQSESEQSSATAVTSRHVTNQASSQSYLLRLQGLLRPVCAEIAGPVGETDNALENAENGVGPVVAQNPSTGDQATSVSLSSAQN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2220 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Ssu1g2220 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 IPR044793 GO:0004842|GO:0010182
Ssu1g2220 373 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Ssu1g2220 373 SUPERFAMILY RING/U-box 215 283 - -
Ssu1g2220 373 MobiDBLite consensus disorder prediction 351 373 - -
Ssu1g2220 373 SMART ring_2 234 274 IPR001841 -
Ssu1g2220 373 CDD RING-H2_RNF111_like 233 277 - -
Ssu1g2220 373 Pfam Ring finger domain 233 275 IPR001841 -
Ssu1g2220 373 MobiDBLite consensus disorder prediction 342 373 - -
Ssu1g2220 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2220 Ssu-Chr1 63002353 63007989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2220 58 353 C3H Transcription Factor Family AT3G47990 68.771 9.09e-145 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2220 K16284 - gmx:100786854 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2220 1 63002353 63007989 Ssu1g2220 1 63002353 63007989 ECH
Ssu6g1364 6 22309546 22317056 Ssu1g2220 1 63002353 63007989 PCT