Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2218 ATGAAGAAGAGATTAGCCAGCACCAGCAATGAGTCCTCTAAACTTGATCGCAAAACCATTGAGAAGAACCGCAGAATTCACATGAAATCTCTCTGCCTTCAGCTTGCTTCTCTTATTCCTCCCAACCTTAAACCATCCAAATCCAAGCTGATGCCGGGGCAGCAGGACCAGTTGGATCTCGCAGCAAGGTATATTAAACACATGAGAGAGAGAATAGAGAAATTGAAGAGACAGAAGGAGCAAGTCATGTCAAACCAAAGCAATGATAGAAAAAGGTTCGATGTTGACTCCAGATTGCCAGTACTTGAGCTAAGAGACTTGGGTTCCGGCATCGAAGTGATGTTGGTGAGTGGGTTGAACAAGACATTTATGTTGTACGAAGTAATTAGTGTCCTCGAGGAAGAAGGCGCTGAAGTCGTCAATGCAAGCTTCTCAACTGTTGGCGACAAAATCTTTTATGTTGTTCATGCTCAGgTTAAAATATCAAGAGTGGGAGTAGAGACGACGAGGGTATATGAAAGACTTCAGGAGTTTATTGCCCCACTAGAAATTTGGCCCGAAGACGTGTGA 570 0.4368 MKKRLASTSNESSKLDRKTIEKNRRIHMKSLCLQLASLIPPNLKPSKSKLMPGQQDQLDLAARYIKHMRERIEKLKRQKEQVMSNQSNDRKRFDVDSRLPVLELRDLGSGIEVMLVSGLNKTFMLYEVISVLEEEGAEVVNASFSTVGDKIFYVVHAQVKISRVGVETTRVYERLQEFIAPLEIWPEDV 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2218 189 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 180 IPR015660 GO:0003700|GO:0006357
Ssu1g2218 189 Gene3D - 12 95 IPR036638 GO:0046983
Ssu1g2218 189 Coils Coil 58 85 - -
Ssu1g2218 189 Pfam Helix-loop-helix DNA-binding domain 17 68 IPR011598 GO:0046983
Ssu1g2218 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 86 IPR036638 GO:0046983
Ssu1g2218 189 SMART finulus 18 74 IPR011598 GO:0046983
Ssu1g2218 189 PANTHER TRANSCRIPTION FACTOR BHLH162 9 180 - -
Ssu1g2218 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 68 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2218 Ssu-Chr1 62895925 62897639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2218 7 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.871 6.80e-27 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g2218 HLH 6.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2218 - - gmx:100790403 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2218 1 62895925 62897639 Ssu1g2218 1 62895925 62897639 ECH
Ssu6g1362 6 22240432 22241377 Ssu1g2218 1 62895925 62897639 PCT