Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2217 ATGGAAGCGAATTTGACCCACAACAGCGATTTCAACGAAGACGATGACATGTTGAAGACATCGCTACCAATAGTGGACTCATTGCAATCTCCACCGCCCCCACTGAAAGAAGAACTCATGGATGTGAACACATCTCTTCTGGTGAGTGTTATTTTGACGCCTTTGATGGTGTCGACGATGGTGGCGAAGCAGCCGTCGAAGGATCGGCACATGAAGGTGGTGGGTCATGGGTGGCAAATCTGCATGCCAACAACGTGCGCGACAAGGATCTTCCAGCTAACACACGAGCTGAGACACAAGTTTGACAAAGAAATAATCCAGTGGTTGTTGGAGCATGCTGAGCCCACGGTCATTGAGGCCACCAGCACCATCCCGGCAATCTGTGGCACCCTCAAGATTCTAACATTCTTTGCAACAAGACCCGAGGGAGAAGACATGTTGAGGAAGCGAAGGAGGAGAGCGTCGAATAGTGAATTCATCATCGTGAACAAAAACAACGTCGCCCCCGTAAATCACCTCTGGCAATGGCACATAGTGGTCGGTGGTAGGGGTGGTTAG 558 0.5036 MEANLTHNSDFNEDDDMLKTSLPIVDSLQSPPPPLKEELMDVNTSLLVSVILTPLMVSTMVAKQPSKDRHMKVVGHGWQICMPTTCATRIFQLTHELRHKFDKEIIQWLLEHAEPTVIEATSTIPAICGTLKILTFFATRPEGEDMLRKRRRRASNSEFIIVNKNNVAPVNHLWQWHIVVGGRGG 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2217 185 Pfam TCP family transcription factor 66 124 IPR017887 -
Ssu1g2217 185 PANTHER TRANSCRIPTION FACTOR TCP9 46 168 - -
Ssu1g2217 185 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 46 168 IPR005333 GO:0003700
Ssu1g2217 185 ProSiteProfiles TCP domain profile. 66 120 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2217 Ssu-Chr1 62853546 62854103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2217 66 163 TCP Transcription Factor Family AT2G45680 55.238 9.55e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu1g2217 TCP 9.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2217 - - gmx:100819475 171.014