Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2216 ATGAAGGAAGGTAGTGATGGGTTTGTGAGGGCAGATCAGATTGATCTGAAGAGCATAGATGAGCAGCTGGAGAGACACCTGAGCAAGGTGTTGATGAAGCAGAAAGAGGAAGAGGATTCTGGTTCTGATCACGGGCGTCACTCTAGCTCTTTTGCCACTGCTACTAAGTTCAAAAGCGTGGCGGGCagtgctgctgctgctgctacCTTCAAGAAGCAAAGGCAAGAGTGGGAAATTGACCCTTCCAACCTCATCATCAAGAGTGTAATAGCCCGCGGCACTTTCGGCACTGTCCACCGTGGCATCTACGATGGCCAAGATGTCGCTGTTAAAATGCTGGATTGGGGTGAAGAAGGGCACCGGACAGAGGCTGAAATTGCTGCCCTCAGGTCGGCGTTTACACAAGAAGTTGCTGTTTGGCATAAACTTGAGCACCCTAATGTCACTAAGTTTATAGGAGCAACAATGGGGTCTTCAGAATTACAGATACAGACTGATAATGGTCTAATTAGCATGCCAAGCAATATCTGCTGTGTAGTTGTAGAGTATCTTGCTGGAGGTACGCTGAAATCTTTCCTAATAAAGAATAGGAGGAGGAAGTTAGCCTTTAAGGTTGTCATCCAGCTGGCACTTGATCTTGCTAGAGGGCTGAGTTATCTTCATTCTCAGAAGGTTGTCCACAGAGATGTAAAGACAGAGAACATGCTGTTGGATAAGACACGCACTGTTAAAATTGCTGATTTTGGGGTTGCTCGTGTTGAAGCGTCAAATCCTAATGACATGACTGGGGAGACTGGTACACTGGGTTACATGGCTCCTGAGGTTTTGAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTTGGCATCTGTTTGTGGGAAATATATTGTTGTGACATGCCATATCCTGACTTAAGTTTCTCAGAGATTACTTCAGCTGTCGTTCGCCAGAATCTGAGACCAGAAATACCAAGATGTTGCCCAAGTGCTCTGGCAAATGTAATGAAGCGATGCTGGGATGCCAATCCTGATAAACGGCCGGAAATGGATGAGGTAGTTTCCATGCTGGAGGCTATTGACACATCCAAAGGTGGAGGTATGATCCCTGTTGATCAGCAGCAGGGTTGTTTTTGCTTCCGTAAGCACAGAGGACCTTGA 1164 0.4545 MKEGSDGFVRADQIDLKSIDEQLERHLSKVLMKQKEEEDSGSDHGRHSSSFATATKFKSVAGSAAAAATFKKQRQEWEIDPSNLIIKSVIARGTFGTVHRGIYDGQDVAVKMLDWGEEGHRTEAEIAALRSAFTQEVAVWHKLEHPNVTKFIGATMGSSELQIQTDNGLISMPSNICCVVVEYLAGGTLKSFLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKVVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSALANVMKRCWDANPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQQQGCFCFRKHRGP 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2216 387 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 381 - -
Ssu1g2216 387 Gene3D Phosphorylase Kinase; domain 1 72 167 - -
Ssu1g2216 387 ProSiteProfiles Protein kinase domain profile. 84 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2216 387 SUPERFAMILY Protein kinase-like (PK-like) 69 358 IPR011009 -
Ssu1g2216 387 PRINTS Tyrosine kinase catalytic domain signature 329 351 IPR001245 GO:0004672|GO:0006468
Ssu1g2216 387 PRINTS Tyrosine kinase catalytic domain signature 285 307 IPR001245 GO:0004672|GO:0006468
Ssu1g2216 387 PRINTS Tyrosine kinase catalytic domain signature 181 194 IPR001245 GO:0004672|GO:0006468
Ssu1g2216 387 PRINTS Tyrosine kinase catalytic domain signature 219 237 IPR001245 GO:0004672|GO:0006468
Ssu1g2216 387 SMART serkin_6 84 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2216 387 MobiDBLite consensus disorder prediction 28 49 - -
Ssu1g2216 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Ssu1g2216 387 CDD STKc_MAP3K-like 90 358 - -
Ssu1g2216 387 Pfam Protein tyrosine and serine/threonine kinase 86 358 IPR001245 GO:0004672|GO:0006468
Ssu1g2216 387 Gene3D Transferase(Phosphotransferase) domain 1 185 377 - -
Ssu1g2216 387 MobiDBLite consensus disorder prediction 28 45 - -
Ssu1g2216 387 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 1 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2216 Ssu-Chr1 62819922 62824153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2216 6 387 MAP Kinase Kinase Kinase AT3G22750 64.508 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Ssu1g2216 PK_Tyr_Ser-Thr 6.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2216 - - gmx:100809898 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2216 1 62819922 62824153 Ssu6g1361 6 22206793 22211053 ECH
Ssu1g2216 1 62819922 62824153 Ssu1g2216 1 62819922 62824153 ECH