Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2214 ATGGAGGTTGTTATTTCTTTGATCATATTGTTTGTGGGGATCGCGATTTTGGTGGTTATCCATATCTGCATCGTGGGTAGGGCTTTCAGAGGTCAAGATGAAGGTACTCAAGGCCAGAGCAGCAATTCCATGAAAAGAATGTTTGGTGGTGACAACATTGGTGACCTGAAGAACCTTCCTTGCTTTGTTTATGAGGAGCCAGAGGGAGGGGGCAGCCTCGTGGATTGTGCTGTTTGCTTGGAGAATTTCAAGGTTGGTGATGTGTGCAGGTTGTTGCCCAATTGCAGCCACAGCTTCCATGTGCAGTGTATAGACTCGTGGATACTCCAGACACCCATTTGTCCCATTTGTAGAACATGGGTTCATTCACGGGTGATGGTTCCCTCTGCTTTGAGGGAAGAAAGGTGCTGTTTctga 417 0.4676 MEVVISLIILFVGIAILVVIHICIVGRAFRGQDEGTQGQSSNSMKRMFGGDNIGDLKNLPCFVYEEPEGGGSLVDCAVCLENFKVGDVCRLLPNCSHSFHVQCIDSWILQTPICPICRTWVHSRVMVPSALREERCCF 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2214 138 SUPERFAMILY RING/U-box 57 124 - -
Ssu1g2214 138 ProSiteProfiles Zinc finger RING-type profile. 76 118 IPR001841 -
Ssu1g2214 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 126 IPR013083 -
Ssu1g2214 138 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 134 - -
Ssu1g2214 138 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 134 - -
Ssu1g2214 138 Pfam Ring finger domain 75 118 IPR001841 -
Ssu1g2214 138 SMART ring_2 76 117 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2214 Ssu-Chr1 62788690 62789106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2214 39 121 C3H Transcription Factor Family AT4G28890 39.759 9.36e-18 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2214 - - gmx:102662620 218.394