Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2212 ATGCAACCTCCCCCCAACTCCTTCGCCACGCAGCGCAGAAACGCCAGAGAAACAGCGCGTCAAGTCGCCATTCTCTCGGTGCTCTTCCAGGAACTCCACGACCACGGGTCTGCCACGTCTCACTCCGTCCGTCTCTGCCTCGCGGAACTCCACGTCACCCTCCAGAAAATCCTCTTCTTACTGCAGGACTGCGCCCGCGAAGGCGCGCGCCTCTGGATGCTAACGAAATCCCAGCACGTGGCCGCGCAGTTTCGCGCCCTTATTCGCGCGGTGGGTGCCGTGCTCGACACGTTACCCCTTCGAGGCGTCGACGTAAGCGGCGAGGTAAAAGAGCTGGTGGAGTTGGTGACCAAGCAAGCTAGGAGAGGCAAGCTCGAGCTCGATCAAAACGACGAACGCCAAACGAAACGACTTCGTTTCCTTCTGGATCAGTTCCAGAGAGGAGTTGAGCCTGACGTGAACGTCGTGAAGTCAGTGCTCAACTACCTTGAGATAAAAACTTGGACCGCTTGTGACAAAGAAGTCAAATTCCTCGAAGAGGAATTAGACTCCAGCGAAGGAGAGGTAAGTTTGTTGAGTAGTTTAATGGGGTTCTTGTGTTACTCTAGAGTGGTCATATTCGAAACCGTGGATTTCCAATCTCTTACAATCGAACAAACCGAAGCAAGACATAGCACGGAGACGTTAAGTTGTGTAGTGCCAGAGGATTTCCGGTGTCCTATTTCGCTCGAGATAATGACTGATCCTGTGACTATATCCACTGGCCAAACCTACAACCGAACCTCCATTCAGAAATGGCTCGAAGCAGGGAACATGATATGTCCAAAAACAAGAGAGGAACTCACGAGCACAGAACTGTTCCCCAACACAGCGCTTAAGAAGCTCGTCCAACAATTCTGTTCCGACAATGACATGGCAATCGCGAACTCGACTAGTCGGAACCGAACCGTAACCAAAACCGCCGAGCCGGGCAGCCCCGCCGCGGCACACGCCATGCAGTTTTCATCCTGGTTTCTCTCGCGGAGGCTCGTGTTTGGAACCGAGGAGCAGAGAACCAAAGCAGCCTACGAGATTCGTTTGCTCGCCCGGTCCAACGTTTTCAACAGGGCGTGCTTGGTCGAAATGGGCACGGTGCCGCCACTGTTGGATCTTCTTGCCGCGGGTGATAAAACCGCGCAAGAGAATGCAATCAGCGCTCTGATGAAGCTCTCGAAGCATCCCGGCGGCCGGCAAGTTGTCGTAGAAAGTAGGGGTTTGGTGCCGATCCTCAATGTTCTCAAAATAGGGCTTAGTCCAGAAGCTCGCCACGTGGCAGCCGCTACGGTGTTTTACCTTTCCTCGGTGAAAGAGTACAGGAAATTGATAGGGGAGAACCCCGAGGCGATCCCGGCGTTGGTGGAGATGGTGAAGGAAGGAGCGACTAAAAAGAACGCGGTGGTTGCGATTTTCGGGCTTCTTCTGCGTCCCAGGAACCACCGAAGGTGCTTGCGGCGGGTGCGGTTCCTGCGCTTGTCAATGTCGTGGCTTCTTCGGATAAGGCTGATCTTGTGA 1551 0.5416 MQPPPNSFATQRRNARETARQVAILSVLFQELHDHGSATSHSVRLCLAELHVTLQKILFLLQDCAREGARLWMLTKSQHVAAQFRALIRAVGAVLDTLPLRGVDVSGEVKELVELVTKQARRGKLELDQNDERQTKRLRFLLDQFQRGVEPDVNVVKSVLNYLEIKTWTACDKEVKFLEEELDSSEGEVSLLSSLMGFLCYSRVVIFETVDFQSLTIEQTEARHSTETLSCVVPEDFRCPISLEIMTDPVTISTGQTYNRTSIQKWLEAGNMICPKTREELTSTELFPNTALKKLVQQFCSDNDMAIANSTSRNRTVTKTAEPGSPAAAHAMQFSSWFLSRRLVFGTEEQRTKAAYEIRLLARSNVFNRACLVEMGTVPPLLDLLAAGDKTAQENAISALMKLSKHPGGRQVVVESRGLVPILNVLKIGLSPEARHVAAATVFYLSSVKEYRKLIGENPEAIPALVEMVKEGATKKNAVVAIFGLLLRPRNHRRCLRRVRFLRLSMSWLLRIRLIL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2212 516 PANTHER U BOX DOMAIN-CONTAINING 6 497 - -
Ssu1g2212 516 Pfam U-box domain 233 303 IPR003613 GO:0004842|GO:0016567
Ssu1g2212 516 Gene3D - 8 101 IPR036537 GO:0007166
Ssu1g2212 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 308 IPR013083 -
Ssu1g2212 516 Pfam Armadillo/beta-catenin-like repeat 368 400 IPR000225 GO:0005515
Ssu1g2212 516 SUPERFAMILY RING/U-box 224 307 - -
Ssu1g2212 516 Gene3D - 339 508 IPR011989 -
Ssu1g2212 516 SUPERFAMILY ARM repeat 345 486 IPR016024 -
Ssu1g2212 516 PANTHER OS07G0532750 PROTEIN 6 497 - -
Ssu1g2212 516 SMART arm_5 365 405 IPR000225 GO:0005515
Ssu1g2212 516 SMART arm_5 406 447 IPR000225 GO:0005515
Ssu1g2212 516 SMART Ubox_2 236 299 IPR003613 GO:0004842|GO:0016567
Ssu1g2212 516 ProSiteProfiles U-box domain profile. 232 306 IPR003613 GO:0004842|GO:0016567
Ssu1g2212 516 CDD RING-Ubox_PUB 237 279 IPR045210 -
Ssu1g2212 516 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2212 Ssu-Chr1 62761849 62763399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2212 5 496 U-box Gene Family AT1G60190 39.723 5.50e-120 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2212 - - gmx:100810963 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2212 1 62761849 62763399 Ssu6g1359 6 22190007 22192055 ECH
Ssu1g2212 1 62761849 62763399 Ssu1g2212 1 62761849 62763399 ECH