Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2211 ATGGTCTCACCGTTCCAGCTGACGGGAATTATCATGCAAAAATATTGCACGAACCAATTGGGGTTGCAGGGCAAATCATACCTTGAAACTTTATTGTTGTTTGCTTTCAAAGTTGGGCCTGCACTAGCATGTGGTAATACTCTCGTAGTAAAGACTGCTGAGCAAACACCTTTGACCCGTTTATTTGCAGCACAGCTATTTCATGAGGTACATTTAATGGTCTATCtaaaatgcataatttttttttttggtcttccaCCAGGGGTTCTAAATATTGTGTCTGGTTTTGGTCCTACAGCTGGTTCTGCTCTTGCCAGTCATATGGACGTGGACAAGCTCGCTTACCCTGGATCAACTGACACGGGAAAAATTGGTCAATGCTGTTGGGCCGGGTCACGCACTTACGTTCATGAACGAAAATATGATGAGTTTTTGGAGAAAGCGAAGGCAACTGCTTTGAGACGTGCTGTCGGCAATCCATTCAAGAAAGGCGTGGAACAAGGTCCTCAGGTAAATATCTCTTTCTTTAAGAAAATCCTCCAATACATAAGCTCAGGTATTGAATCCAATGCTATTCTGGAATGTGGCGGTGAAAGAATTGGCACAAAAGGCTTCTTTGTCCAACCAACAGTCTTCTCAAATGTTGAGGATGATATGCTGATAGCAAAAGATGAAATCTTCGGCCCAGTCCAAACGATACTAAAATTCAAGGACACTTCTGAAGTTATAAGAAGAGCAAACACAACGCGTTATGGTCTTGCGGCGGGCGTGTTCACAAAGAACTTGGACACGGCCAATGCGATGATGCTGGGATTAAGGGCTTGA 825 0.4242 MVSPFQLTGIIMQKYCTNQLGLQGKSYLETLLLFAFKVGPALACGNTLVVKTAEQTPLTRLFAAQLFHEVHLMVYLKCIIFFFGLPPGVLNIVSGFGPTAGSALASHMDVDKLAYPGSTDTGKIGQCCWAGSRTYVHERKYDEFLEKAKATALRRAVGNPFKKGVEQGPQVNISFFKKILQYISSGIESNAILECGGERIGTKGFFVQPTVFSNVEDDMLIAKDEIFGPVQTILKFKDTSEVIRRANTTRYGLAAGVFTKNLDTANAMMLGLRA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2211 274 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 29 126 IPR016162 GO:0016491
Ssu1g2211 274 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL-LIKE 30 124 - -
Ssu1g2211 274 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 125 273 - -
Ssu1g2211 274 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 127 273 IPR016163 GO:0016620
Ssu1g2211 274 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 30 124 - -
Ssu1g2211 274 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL-LIKE 125 273 - -
Ssu1g2211 274 SUPERFAMILY ALDH-like 31 273 IPR016161 GO:0016491
Ssu1g2211 274 Pfam Aldehyde dehydrogenase family 31 123 IPR015590 GO:0016491
Ssu1g2211 274 Pfam Aldehyde dehydrogenase family 125 272 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2211 Ssu-Chr1 62735877 62739519 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2211 31 274 Aldehyde Dehydrogenase Gene Family AT3G48000 59.310 3.05e-116 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2211 K00128 - tcc:18603880 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2211 1 62735877 62739519 Ssu6g1358 6 22168401 22173250 ECH
Ssu1g2211 1 62735877 62739519 Ssu1g2211 1 62735877 62739519 ECH