Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2209 ATGGTCATGGCAACTCGTAGACTTTCCTGGCTCCTTTCTCGTTCTCTGTCTGCTTCCCCTTCTTCTCAAGCTGCTTCTCTATTTCACTCACTAGGGAGAAATTCTGGCAAGTGGGGAAATATTAACAGATTCAGCACTGCAGCAGCAGTTGAGGAATTAATCACTCCACAAGTTCCGATAACATACACAAAGCATCTGATAAATGGACAATTTGTGGATGCTGCATCAGGGAAAACTTTTCCAACATATGACCCGCGCACAGGGGAAGTGATTGCTCATGTCGCTGAAGGTGATGTAGAAGATATCAACCGTGCAGTATCGGCAGCTCGCAAGGCCTTTGATGAGGGACCTTGGCCAAAAATGACTGCTTATGAAAGATGTAAGATAATTCTGCGCTTCGCTGATTTGGTTGAGAAACACAGTGATGAACTTGCAGCTCTGGAGACATGGAACAATGGAAAGCCTTATGAACAATCTGCCAGTTCTGAATTACCATTGTTTGTGCGTTTGTTTCATTACTATGCCGgtTGGGCAGATAAAATCCATGGTCTGACAGTCCCTGCTGATGGAGATTATCATGTGGAGACATTGCATGAACCAATTGGTGTGGCAGGACAAATCATACCTTGGAACTTTCCTCTCATCATGTTTGCTTGGAAAGTTGGACCAGCTCTTGCATGTGGAAATACTGTCATCCTCAAGACTGCTGAACAAACACCTTTAACGGCTCTCTATGTGGCAAAACTTTTTCATGAgGCTGGTCTTCCACCTGGTGTTTTGAATGTAGTTTCTGGCTATGGTCCAACTGCTGGTGCAGCTCTTGCAAGTCATATGGATGTTGACAAGCTAGCATTCACTGGATCTACTGAGACTGGAAAAATTGTGCTTGAATTGGCGGCGAGAAGCAATCTGAAGCCTGTGACATTGGAACTTGGAGGGAAATCGCCTTTCATAATATTTGAGGACGCTGATGTTGACCAGGCTGTAGAACTTGCGCACTTTGCTCTGTTCTTTAATCAGGGGCAATGTTGCTGTGCTGGGTCTCGTACCTTTGTACATGAGCGTATCTATGATGAGTTCTTGGAGAAATCAAAGGCTCGTGCTTTGAAACGTGTTGTTGGGGATCCCTTCAAGAAGGGTGTCGAACAAGGTCCTCAGATTGATGTGGAACAATTTCAGAAAGTCCTTAGGTACATAAAGTCTGGTATTGAAAGCAACGCTACCCTTGAATGTGGGGGTGACAGAATTGGCTCAAAGGGCTTCTTTGTGCAGCCTACTGTTTTCTCAAATGTTCAGGATGACATGTTGATAGCAAAAGATGAAATCTTTGGCCCAGTTCAATCCATCTTGAAGTTCAAGGACATTGACGAAGTAATTCGAAGGGCAAATGCAACGCGTTATGGTCTAGCTGCAGGTGTTTTCACCAAGAACGTGCACACAGCCAACACTATGATGCGAGCACTGAGGGCCGGAACTGTGTGGATTAATTGCTTTGATGTTTTTGATGCTGCAATTCCTTTTGGAGGGTACAAGATGAGCGGCATTGGCAGGGAGAAGGGAATCTACAGTCTCAACAATTACCTGCAGGTCAAAGCCGTGGTTTCACCATTGAAGAATCCTGCATGGCTTTGA 1632 0.4485 MVMATRRLSWLLSRSLSASPSSQAASLFHSLGRNSGKWGNINRFSTAAAVEELITPQVPITYTKHLINGQFVDAASGKTFPTYDPRTGEVIAHVAEGDVEDINRAVSAARKAFDEGPWPKMTAYERCKIILRFADLVEKHSDELAALETWNNGKPYEQSASSELPLFVRLFHYYAGWADKIHGLTVPADGDYHVETLHEPIGVAGQIIPWNFPLIMFAWKVGPALACGNTVILKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTETGKIVLELAARSNLKPVTLELGGKSPFIIFEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHERIYDEFLEKSKARALKRVVGDPFKKGVEQGPQIDVEQFQKVLRYIKSGIESNATLECGGDRIGSKGFFVQPTVFSNVQDDMLIAKDEIFGPVQSILKFKDIDEVIRRANATRYGLAAGVFTKNVHTANTMMRALRAGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLNNYLQVKAVVSPLKNPAWL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2209 543 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 337 348 IPR016160 GO:0016491
Ssu1g2209 543 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 31 543 - -
Ssu1g2209 543 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 67 531 IPR016162 GO:0016491
Ssu1g2209 543 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 31 543 - -
Ssu1g2209 543 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 309 316 IPR029510 GO:0016491
Ssu1g2209 543 CDD ALDH_F2BC 60 534 - -
Ssu1g2209 543 Pfam Aldehyde dehydrogenase family 71 533 IPR015590 GO:0016491
Ssu1g2209 543 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 313 502 IPR016163 GO:0016620
Ssu1g2209 543 SUPERFAMILY ALDH-like 57 536 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2209 Ssu-Chr1 62720098 62726287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2209 3 543 Aldehyde Dehydrogenase Gene Family AT3G48000 79.336 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2209 K00128 - gmx:100811501 1009.98