Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2208 ATGAACAGCGATCTGTATCGCTTCGCAGTTACATCCCACTTCAGCCGCTTCCCGAAATCGTTCTCTCTGAGAAAGAAAGTCCCGTGGTGGTACCAAATCCTGGACCCCCGGTCCAAGTTCGTGGCGCGATGGAACCGCACATTCCTCTACGTGTGCATCGCGGCTCTGTTCTTGGACCCTCTCTACTTCTATTTCCCCATCACCGGGGACAAGGCGTGCATGCAAACCGACATCATCCTCGGCGTCTTCGTCACCTTCTCGCGCACCGTCGCCgacttcttcttcatcttccacaTGTTCATCAAGTTCCGCACCGCTTTCGTCTCTCCCACCTCTCGCGTCTACGGCCGCAAAGAACTCGTCACCGATCCTCGCCAAATCGCCTCGCGCTACCTCAAGTCCGATTTCGTTGTTGATCTCCTCGCCACCCTTCCTCTGCCTCAGATAGTGATCTGGTTCGTGATTCCGGCGTTGAAAAATTCAACGGTGGCTCATACAAATCACACCCTGTCCTTGATTGTTCTCACTCAGTTTATTCCTCGGTTGTTCCAGATTTTTCCTCTGCAACGGAGAATCTTGAAGACTAGTGGGCTTATCGCCAAAACTGCCTTGGCAGGGGCCTTATACAATCTTGGTTCCTACATGCTAGCCAGCCatGTTTTAGGAGCTGCATGGTACGTGTCATCAATTCAGCGCCAGTACGAGTGTTGGAGAATAACATGCAGAAAGGAGATGAACAGAACGCACTCTCCATCTTGTAACCCTTCGTTTCTCGACTGTGCTAGCATGTCCAACAACGAACGCCAAGCTTGGTTCAAACGCACGAGAGTTCTCACCGATTGCGATGCCCTCaatgataaaaacaagtttCAGTTTGGAATGTTCGCTGATGCTTTCACTGATCACGTCTCTTCATCAAGATTCTTCCAAAAATACTTCTACTGTCTCTGGTGGGGTTTGAGGAATCTAAGTTCATACGGACAAAATCTTCATACTAGTACTTACATTGGTGAAACATTATTTTCAAGTTTCATATGCATCGCAGGTCTAATCCTGTTTGCGCATCTCATTGGTAACATGCagaattatcTGCAATCTACAACTGCAAGAGTTGAAGAGTGGAGACTTAAACAGAAAGATACAGAAGAGTGGATGAATCACCGCCAGCTTCCACCAGAACTGCAAGAACGTGTTCGCCGGTTTGTTCAATATAAATGGCTTGCCACTAGAGGAGTAGACGAAGAAGCCATTTTACGCGCTTTGCCTTTGGACCTTCGGCGCCAGATTCAGAGGCATCTCTGTCTTGACATTGTTCGTCGGGTTCCTTTTTTTGGTCAAATGGATGACCAGCTTCTAGATGCCATATGCGAACGCCTTGTTTCGTCCTTGAACACAAAAGACACATACATCGTTCGCGAAGGTGATCCGGTGAGAGAAATGCTTTTCATCATTAGAGGACAAGTAGAGAGTTCCACCACCGATGGTGGGAGAACAGGATTCTTCAACTCCATCACCCTCAGACCCGGTGACTTTTGCGGTGAAGAATTGCTGACATGGGCCCTGATGGCCACTTCTAGTCTCAACCTTCCATCTTCCACTCGAACCGTGAAGACCCTCGCCGAGGTTGAAGCATTCGCTCTTAGAGCTGAGGACCTCAAATTTGTGGCGAGCCAGTTCAAGCGCCTCCACAGCAAGAAACTGCAGCATGCTTTTAGGTACTATTCGCATCAGTGGAGGGCTTGGGGGGCTCACTTTATACAAGCCGCGTGGAGACGCCACCGCAAGAGAAAATTGGCGATGGAGTTGTTGGAGAAAGAGAACTTGTACTACGCAAATGTGATGGAGATAGAAGATGATGGTGAAGGAACTAGTGCGGGTGAGAGCTCAATGGGGGACAATGCGGGTCATACCCAGAATCTTGGGGCTACAGTTTTGGCTTCGAAATTTGCTGCAAACACTAGAAAAGGGGCAGTTAAAAAGGTCGCTATTAATATTCCTGATGCTAGCAGTTTGAAGATGCCCAAGATGTTCAAGCCAACGGAACCTGATTTCTCAACATTCCAAGATGATTAG 2073 0.4761 MNSDLYRFAVTSHFSRFPKSFSLRKKVPWWYQILDPRSKFVARWNRTFLYVCIAALFLDPLYFYFPITGDKACMQTDIILGVFVTFSRTVADFFFIFHMFIKFRTAFVSPTSRVYGRKELVTDPRQIASRYLKSDFVVDLLATLPLPQIVIWFVIPALKNSTVAHTNHTLSLIVLTQFIPRLFQIFPLQRRILKTSGLIAKTALAGALYNLGSYMLASHVLGAAWYVSSIQRQYECWRITCRKEMNRTHSPSCNPSFLDCASMSNNERQAWFKRTRVLTDCDALNDKNKFQFGMFADAFTDHVSSSRFFQKYFYCLWWGLRNLSSYGQNLHTSTYIGETLFSSFICIAGLILFAHLIGNMQNYLQSTTARVEEWRLKQKDTEEWMNHRQLPPELQERVRRFVQYKWLATRGVDEEAILRALPLDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDTYIVREGDPVREMLFIIRGQVESSTTDGGRTGFFNSITLRPGDFCGEELLTWALMATSSLNLPSSTRTVKTLAEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRAWGAHFIQAAWRRHRKRKLAMELLEKENLYYANVMEIEDDGEGTSAGESSMGDNAGHTQNLGATVLASKFAANTRKGAVKKVAINIPDASSLKMPKMFKPTEPDFSTFQDD 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2208 690 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 9 687 - -
Ssu1g2208 690 Gene3D Helix hairpin bin 369 434 - -
Ssu1g2208 690 SUPERFAMILY Voltage-gated potassium channels 35 365 - -
Ssu1g2208 690 Gene3D - 46 367 - -
Ssu1g2208 690 Pfam Cyclic nucleotide-binding domain 466 554 IPR000595 -
Ssu1g2208 690 Gene3D Jelly Rolls 441 561 IPR014710 -
Ssu1g2208 690 SUPERFAMILY cAMP-binding domain-like 372 568 IPR018490 -
Ssu1g2208 690 SMART cnmp_10 443 574 IPR000595 -
Ssu1g2208 690 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 9 687 - -
Ssu1g2208 690 Pfam Ion transport protein 44 371 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu1g2208 690 ProSiteProfiles cAMP/cGMP binding motif profile. 443 517 IPR000595 -
Ssu1g2208 690 CDD CAP_ED 443 574 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2208 Ssu-Chr1 62691753 62697330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2208 10 684 Ion Channels AT3G48010 65.093 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2208 K05391 - gmx:100783672 1287.32