Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2207 ATGGTGGCAAGGTCATGCTTGAATTTGTTGGACCTCGTATCAGGGGATATGCTAAATGTCCCTCAAACTCCCAGATCTCTTCCACGAGTTATGACTGATCCGGTAATCATGTCTGATGTAGATGGTAAACAAAGTAATGATGATGGTTCAAGTGTTTTCTCAGCAGAACACCATCGCAAGATAATTATAGTATCAAATTCTCTTCCTCTCAATGCAAAAAGGGATCAAATATCCGGCAGATGGTGCTTCAGTTATGATGAGGATTCAATTTTTTGGCAGTTAAAGGATGGTTTCTCTCGTGATACTGATGTTGTTTATGTGGGATCTCTAAAGGTTGATGTTGATGCAAGTGAGCAAGAGAAAGTTTCCCTTCAGTTGCTGGAGGAATTCAATTGCTTGCCTACTTTTATTCCTTCAGACATCTACAAACAATTCCATGATGGATTCTGCAAGCAACATTTGTGGCCTCTATTCCATTACATGTTGCCCATGTATCCAGGCAATCGCCGCTTTGATAGATCACAGTGGCAGGCTTATGTTTCTGCTAACAAGATATTTGCAGATAAAGTCATGGAGGTCCTTAATCCAGAAGATGATTATGTATGGGTTCATGATTATCATCTTATGGTCCTTCCAACATTTCTGCGAAAGCGATGTAGTCGAGTCAGGCTTGGTTTTTTTCTCCACAGTCCATTTCCATCATCAGAAATTTATAAAACTCTGCCTGTCAGAGGTGAAATTTTGAAAGCACTGCTTAATGCAGATCTAATTGGTTTTCACACCTTTGATTATGCTCGTCATTTTCTCTCCTGCTGCAGGCGAATGCTTGGCTTGGAACATGAATCCAAGAGGGGTTACATTGGGCTTGACTACTTTGGCCGTacaatattcattaaaatattgcCTGCTGGGATTCACATGGGTCGACTTCAGTCTGCCTTAGATCATCCTTCCTCCTCTAACAAAGTCAGAGAAATCCACCAACAATTTAAGGGGAAAAAGCTTATTGTTGGTGTTGATGATATGGACATATTCAAAGGTGTCAGTTTAAAATTCTTAGCCATAGAGCAACTCCTGCAGCAACATCCAGAACTGCAAGGTGAATTAATACTGATCCAAATTTTAAATCCCCCAAGTAGTTCTGACAAAGATGTTGAGGATGCAAAGGAGGAGGCCTACATTACTgccaaaaagataaatgaaaggTTTGGTTTGGAAGGTTATGAACCTATCATCATCATTGATCGCCATGTTCCTTTCTATGAGAAGGCAGCCTATTATGCTTTGGCAGAGTGTTGCATTGTGAATGCAGTGCGTGATGGTTTGAATTTGGTTCCATACAAGTACACTGTTTGTAGACAGGGAAGTTCTAAACTGGATGAAGCTTTAGAAATTGCTTCCGACGCCCCGCGTATAAGTGCACTTGTTGTTTCTGAGTTTATAGGTTGCTCACCATCTCTTAGTGGGGCAATAAGGGTAAATCCATGGGATATTGATGCAGTAGCTGAAGCACTAAATTTGGCAATCACAATGCCTGATGGAGAGAAGCAGCTTCGACATGAGAAGCACTATCGATATATTAGTACTCATGATGTGGCCTATTGGGCCCGAAGCTTTGAGCAAGATCTAGTGTTCTCATGCAAGGATCACTACAGGAAACGTTGCTGGGGCATTGGCTTTGGCCTGAACTTCAGAATTTTGTCCCTCTCTCCTAGTTTCAGGAAGCTATCCATAGACCACATTGTCACTGCATATAAAAGGACCAATTGCAGGGCAATCTTTTTGGATTATGATGGTACAGTTGTACCTCAAGCTTCCATTGTTAAACCCCCCGGTCCTGAAGTCATATCTGTGCTAAATAATCTTTGCAGGGATGTTAACAACACTGTGTTTATTGTTAGTGGCAGGGGAAAACCTTCACTGAGTGAATGGTTTGATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTCATAAGGTGGGGTCAACATACTAGTTGGCAAATGAGTCACGTAGATACAGATTTTACATGGAAAAGGATTGCTGAACCTGTGATGAGATCTTATATGGAGGCCACAGACGGCTCCTCTGTAGAGACCAAAGAGAGTGCCTTGGTATGGCATTACCGTGATGCCGATCCTGATTTTGGATCTTGGCAAGCTATGGAGCTTTTGGATCACCTTGAGAATGTACTTGCAAATGAGCCTGTAGTTGTCAAAAAGGGACAACATATTATTGAAGTCAAGCCTCAGGGCATTACTAAAGGGTTAGTTGCACAGGAAGTTCTTTCTACCCTAACCAGGAAGGGTAAATCGCCAGATTTTGTACTGTGCATTGGTGATGATAGATCTGATGAGGATATGTTTGAGAGCATATTAGCCAAACCTTATGGTGCTACCTCCTCCTCAGCACCAGAAATCTTTGCATGCACTGTTGGACAAAAACCAAGCAAAGCTAGATACTACCTAGATGACACTGTGGACGTGATGACATTACTTGAGGGTCTTGGTGCCGCTTCAGGGCCTCAATCAAGACACTCTACAGAAACCCCTTTTGAGAAAAGAGAAGTATGTTTTGAGAATACTGTTTAA 2598 0.4138 MVARSCLNLLDLVSGDMLNVPQTPRSLPRVMTDPVIMSDVDGKQSNDDGSSVFSAEHHRKIIIVSNSLPLNAKRDQISGRWCFSYDEDSIFWQLKDGFSRDTDVVYVGSLKVDVDASEQEKVSLQLLEEFNCLPTFIPSDIYKQFHDGFCKQHLWPLFHYMLPMYPGNRRFDRSQWQAYVSANKIFADKVMEVLNPEDDYVWVHDYHLMVLPTFLRKRCSRVRLGFFLHSPFPSSEIYKTLPVRGEILKALLNADLIGFHTFDYARHFLSCCRRMLGLEHESKRGYIGLDYFGRTIFIKILPAGIHMGRLQSALDHPSSSNKVREIHQQFKGKKLIVGVDDMDIFKGVSLKFLAIEQLLQQHPELQGELILIQILNPPSSSDKDVEDAKEEAYITAKKINERFGLEGYEPIIIIDRHVPFYEKAAYYALAECCIVNAVRDGLNLVPYKYTVCRQGSSKLDEALEIASDAPRISALVVSEFIGCSPSLSGAIRVNPWDIDAVAEALNLAITMPDGEKQLRHEKHYRYISTHDVAYWARSFEQDLVFSCKDHYRKRCWGIGFGLNFRILSLSPSFRKLSIDHIVTAYKRTNCRAIFLDYDGTVVPQASIVKPPGPEVISVLNNLCRDVNNTVFIVSGRGKPSLSEWFDQCENLGIAAEHGYFIRWGQHTSWQMSHVDTDFTWKRIAEPVMRSYMEATDGSSVETKESALVWHYRDADPDFGSWQAMELLDHLENVLANEPVVVKKGQHIIEVKPQGITKGLVAQEVLSTLTRKGKSPDFVLCIGDDRSDEDMFESILAKPYGATSSSAPEIFACTVGQKPSKARYYLDDTVDVMTLLEGLGAASGPQSRHSTETPFEKREVCFENTV 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2207 865 SUPERFAMILY HAD-like 591 838 IPR036412 -
Ssu1g2207 865 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Ssu1g2207 865 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 850 - -
Ssu1g2207 865 Gene3D - 673 753 - -
Ssu1g2207 865 TIGRFAM T6PP: trehalose-phosphatase 591 837 IPR003337 GO:0003824|GO:0005992
Ssu1g2207 865 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 850 IPR001830 GO:0003824|GO:0005992
Ssu1g2207 865 Gene3D Glycogen Phosphorylase B; 52 311 - -
Ssu1g2207 865 Gene3D Glycogen Phosphorylase B; 312 528 - -
Ssu1g2207 865 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Ssu1g2207 865 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 792 IPR006379 -
Ssu1g2207 865 Gene3D - 593 825 IPR023214 -
Ssu1g2207 865 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 543 - -
Ssu1g2207 865 CDD HAD_TPP 592 832 - -
Ssu1g2207 865 Pfam Trehalose-phosphatase 594 827 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2207 Ssu-Chr1 62641824 62644895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2207 1 865 Trehalose Biosynthesis Gene Families AT1G23870 65.629 0.0 1228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2207 K16055 - gmx:100812031 1654.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2207 1 62641824 62644895 Ssu6g1355 6 22114687 22117598 ECH
Ssu1g2207 1 62641824 62644895 Ssu1g2207 1 62641824 62644895 ECH
Ssu6g1355 6 22114687 22117598 Ssu1g2207 1 62641824 62644895 PCT