Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2204 ATGGGTCTAAAACCCATCTGGGTATTCTTCATTGTCATCCTTTTGTTTTCTATAGTGGCCAATTCAGAAGAAGAGGTGATCAAGGCCCTAGTCACGTTCATGGGTAAATTGGCACCAGGGAATGTGCCAAGAGACCCTAAATGGGGTTGGAACCTTACATCAGATCCCTGCATTGATAAGTGGCATGGTGTGAGGTGCTATTCAGACAACAAATACGTTAAGACTATAATTCTTGAGAACTTCAATTTTGGTGGAGTTGTAGACGCCAGTTCTCTTTGCATTGCAAAGTCTCTTCAAATCCTTAGCCTCAGGGACAACAGTTTACATGATTCAATATCAGAGGATATAGGAAACTGCAAGTTTTTGACTCACTTGCTTTTAAGTGGGAATCAATTCTCTGGGGACCTTCCTATTTCCCTTGGCAAACTAAGTAACATGAAGCGGCTTCATATTTCGGACAACCACTTCACTGGAGAGCTTCCTAACATGGTTCACGTTTCAAGTTTGATATCATTTTTTGCTGAAAACAACAACTTCGCTGGGGAGATTCCTAGTTTTGACTTCTCCAACCTTGATGCGTTTAATGTCTCTAACAACAATTTACAAGGTCCAGTTCCTGATGTCGGAGGCAAATTCCATGCAGACAGCTTTTCTGGTAATCCTAACCTATGTGGAAAACCACTTTCAAACGCATGTCCACcacttcctcctcctcctccaccacctGAAAAGAAGGACCAAAAATCATTCCCTAATGATTTGTCCATTTATTCAGGTTACTTAGTCCTTGGTTTAATTGTCCTGCTTTTCTTGACCTTTAAGCTTTTAAGTAAGTTCAAGACCAAAGAAAAAGCATTGGATGTTGAAAAGAAGGAAATGGCACAAGAAACTGTTGGTGGCAAGGCTAGTGAAATATCCACTTCCAATGGATCAAAGAATGGCACTGGGATTAGATCTGAGCATTCGTTGACATCTTTGGAAAGTGGGATGACAACATCAGGTCTTGTTCTTCTTTCAAGTCGAACGCTTAGAGGGTTGCAATTTGAGGACTTGCTTGGTGCCCCTGCTGAATTGATTAGGAGGGGAAAGCATGGGAGCCTCTACAAGGTTATGCTCGATAATGGGGTGCTGTTGGCAGTGAAGAGGATCAAGGATTGGGGAATTTCAAAGCAGGATTTTGAGAGAAGGATGAATTTGATAGCCCAAGTGAAGCATCCACGCGTATTGCCACCTGTTGCATACTATTGCTCTCAGCAAGAGAAGCTCCTAGCCTATGAATATCTGCAGAATGGTAGTCTCTTCATGCTGCTCTATGGATCTCAAAGTGGCCACTCTTTTGACTGGGGAAGCAGACTAAATGTTGCTGCTAAGATAGCTGAGGCTTTGGCATATATGCATGAGGAGTTTCTTGAGAATGGAATAGCACATGGTAACTTAAAatcaagtaacattttgtttgacAAGAATATGGATCCGTGCATAAGCGAATATGGCCTAGTGATGGcagaaaatcaaaatcaatttgtcCTTTCCGACAACAAAGGCCTCAAAAGCAAAGATCTGATTGCAGCCACTTTCAAAGCTGATATATATGCCTTTGGTATGATACTTCTCGAGCTGCTGACGgggaaagtaattaaaaatgatggaTTTGATCTAGTTAAATGGGTGAATTCAGTGATCAGAGAGGAATGGACTGTTGAAGTTTTTGACAAGCCCCTAATCTCACAAGGTGCTTCTGAAGAGAGGATGATGAATTTGTTGCAGGTAGCATTAAAATGCGTAAATCCTTCTCCAAATGATAGGCCAAGTATGAGCCAAGTTGCAGTGATGACAAATGCTttgaaagaggaggaagaaaaatcCATATCCTTTGACACATGA 1884 0.3928 MGLKPIWVFFIVILLFSIVANSEEEVIKALVTFMGKLAPGNVPRDPKWGWNLTSDPCIDKWHGVRCYSDNKYVKTIILENFNFGGVVDASSLCIAKSLQILSLRDNSLHDSISEDIGNCKFLTHLLLSGNQFSGDLPISLGKLSNMKRLHISDNHFTGELPNMVHVSSLISFFAENNNFAGEIPSFDFSNLDAFNVSNNNLQGPVPDVGGKFHADSFSGNPNLCGKPLSNACPPLPPPPPPPEKKDQKSFPNDLSIYSGYLVLGLIVLLFLTFKLLSKFKTKEKALDVEKKEMAQETVGGKASEISTSNGSKNGTGIRSEHSLTSLESGMTTSGLVLLSSRTLRGLQFEDLLGAPAELIRRGKHGSLYKVMLDNGVLLAVKRIKDWGISKQDFERRMNLIAQVKHPRVLPPVAYYCSQQEKLLAYEYLQNGSLFMLLYGSQSGHSFDWGSRLNVAAKIAEALAYMHEEFLENGIAHGNLKSSNILFDKNMDPCISEYGLVMAENQNQFVLSDNKGLKSKDLIAATFKADIYAFGMILLELLTGKVIKNDGFDLVKWVNSVIREEWTVEVFDKPLISQGASEERMMNLLQVALKCVNPSPNDRPSMSQVAVMTNALKEEEEKSISFDT 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2204 627 Pfam Protein kinase domain 359 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g2204 627 Gene3D Transferase(Phosphotransferase) domain 1 428 626 - -
Ssu1g2204 627 SUPERFAMILY Protein kinase-like (PK-like) 357 611 IPR011009 -
Ssu1g2204 627 Gene3D Ribonuclease Inhibitor 187 235 IPR032675 -
Ssu1g2204 627 Gene3D Phosphorylase Kinase; domain 1 341 427 - -
Ssu1g2204 627 PANTHER LRR RECEPTOR-LIKE KINASE 2 626 - -
Ssu1g2204 627 MobiDBLite consensus disorder prediction 300 319 - -
Ssu1g2204 627 Gene3D Ribonuclease Inhibitor 28 186 IPR032675 -
Ssu1g2204 627 SUPERFAMILY L domain-like 46 228 - -
Ssu1g2204 627 MobiDBLite consensus disorder prediction 228 249 - -
Ssu1g2204 627 PANTHER OS05G0588300 PROTEIN 2 626 - -
Ssu1g2204 627 MobiDBLite consensus disorder prediction 299 319 - -
Ssu1g2204 627 MobiDBLite consensus disorder prediction 230 245 - -
Ssu1g2204 627 ProSiteProfiles Protein kinase domain profile. 353 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2204 Ssu-Chr1 62581086 62583745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2204 50 608 Receptor kinase-like Gene Family AT1G48480 34.500 1.26e-94 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu1g2204 Pkinase 5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2204 - - gmx:100787974 1078.16