Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2201 ATGCATGGGCGTGGAGGTGAGAAGAGGAAGGGGACTCGGCACATGTGGAAAGCCCCCGCACGTGGCGACTCGTCTCTGAACGCCGATGTTTCTTCGTCTTCTTCGTCGTCGTCGTCGACAGTGAAGTCGTTCTGTAAGGACGGTCGCAAAATTAGTGTTGGTGAATGTGCTCTCTTCAAACCATCTGAAGATCGCCCACCATTTATTGGTATAATTCATTGTCTGACAATTGGCAAAGAGAACAAATTAAAGTTGGGTGTTAGTTGGCTTTACCGAACCATTGAAGTAAAACTCAGCAAGGGCGTGCCATTGGAGGCTGCTCCAAACGAAATCTTCTACACCTTCCACAAGGATGAGATTGATGCTGAATCGCTGCTCCATCCTTGTAAAGTTGCATTTCTTCCTAAGGGTGCTGAACTTCCATCAGGGATTTCTTCATTTGTGTGCAGGAGGGTTTATGACCTTGCAAACAAGTGTTTATGGTGGttaaatgatcaagattatattaatGATTGTCAAGAAGAAGTAGATCAACTATTATACAGGACTTGTGTAGAAATGCATGCAACAGTGCAGCCAGGTGGCCGATCTCCTAAGCCAATGAGTAGTCCAACATCAACATCACAGTTAAAATCTGTTTCAGATAGTGTCCAGAACAGTGCTTCTTCCTTTCCATCTCACATTAAGGGGAGGAAAAGGGAAAGGGCAGATCAAGGCTCTGAGCCTGTCAAGCGAGAACGATCAATAAAAACTGAGGACGGAGATTCTGGTAATTTTAGGCATGATAACATTTTGAAGACAGAGATTGCTAAAATTACAGAAAATGGAGGGCTTGTTGATAGTGAAGGAGTTGAAAGATTAGTGCAGCTGATGGTTCCTGATAGAAATGAGAAGAAGATAGATTTAGCTAGCCGGTCACGGCTTGCATCTGTCATTGCAGCAACAGATAAATTAGACTGTCTTAGTCAGTTTGTGCAGCTGAGGGGTTTGCCTGTATTTGATGAATGGCTCCAAGAGGTCCATAAAGGGAAGATTGGTGATGGTATTGGGTCTAGGGATGTTGATAAATCTGTTGAGGAATTTCTCTTGGTATTGCTTCGGGCACTTGATAAGCTTCCAGTAaatcttcaggctttacaaacaTGCAACATTGGAAAATCTGTGAATCATTTGCGAACTCTTAAAAACGCAGAAATTCAGAGGAAAGCAAGAGGTTTAGTTGACACATGGAAGAAACGTGTTGAAGCtgaaatgaatataaaagaTGCAAAGTCTGGTTCAGGTCCCAGTGTCCACTGGCCTGCCAAATCACGTCCTTCTGATGTTGGTCAAGGTGGAAATAGACATTCAGGTGCATCATCTGATGTTGCCATGAAGAGTTCAGTTACACAGCTTTCTGCATCCAAAACTGCCTCTGTGAAGATTGTCCAGGGAGAGAATACTACTAGATCTGTGTCGACATCCACATTTCCGGGGCCTTCAAAATCAGTGCCACATGCATCTGCTATTACAAACTTAAAAGATGGACAGCCCCTGCATTGCTGTTGTCAATGGAGGTTCTGA 1563 0.4261 MHGRGGEKRKGTRHMWKAPARGDSSLNADVSSSSSSSSSTVKSFCKDGRKISVGECALFKPSEDRPPFIGIIHCLTIGKENKLKLGVSWLYRTIEVKLSKGVPLEAAPNEIFYTFHKDEIDAESLLHPCKVAFLPKGAELPSGISSFVCRRVYDLANKCLWWLNDQDYINDCQEEVDQLLYRTCVEMHATVQPGGRSPKPMSSPTSTSQLKSVSDSVQNSASSFPSHIKGRKRERADQGSEPVKRERSIKTEDGDSGNFRHDNILKTEIAKITENGGLVDSEGVERLVQLMVPDRNEKKIDLASRSRLASVIAATDKLDCLSQFVQLRGLPVFDEWLQEVHKGKIGDGIGSRDVDKSVEEFLLVLLRALDKLPVNLQALQTCNIGKSVNHLRTLKNAEIQRKARGLVDTWKKRVEAEMNIKDAKSGSGPSVHWPAKSRPSDVGQGGNRHSGASSDVAMKSSVTQLSASKTASVKIVQGENTTRSVSTSTFPGPSKSVPHASAITNLKDGQPLHCCCQWRF 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2201 520 MobiDBLite consensus disorder prediction 191 260 - -
Ssu1g2201 520 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 282 418 IPR035441 -
Ssu1g2201 520 MobiDBLite consensus disorder prediction 196 226 - -
Ssu1g2201 520 MobiDBLite consensus disorder prediction 1 42 - -
Ssu1g2201 520 Gene3D - 32 275 IPR043151 -
Ssu1g2201 520 ProSiteProfiles BAH domain profile. 49 164 IPR001025 GO:0003682
Ssu1g2201 520 MobiDBLite consensus disorder prediction 419 463 - -
Ssu1g2201 520 MobiDBLite consensus disorder prediction 25 42 - -
Ssu1g2201 520 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 319 428 IPR035441 -
Ssu1g2201 520 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 511 - -
Ssu1g2201 520 MobiDBLite consensus disorder prediction 227 260 - -
Ssu1g2201 520 MobiDBLite consensus disorder prediction 443 463 - -
Ssu1g2201 520 ProSiteProfiles TFIIS N-terminal domain profile. 340 417 IPR017923 -
Ssu1g2201 520 SMART BAH_4 49 164 IPR001025 GO:0003682
Ssu1g2201 520 Pfam TFIIS helical bundle-like domain 365 414 IPR017923 -
Ssu1g2201 520 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 511 - -
Ssu1g2201 520 Pfam BAH domain 50 157 IPR001025 GO:0003682
Ssu1g2201 520 SMART TFS2_5 337 416 IPR003617 GO:0005634
Ssu1g2201 520 CDD TFIIS_I 339 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2201 Ssu-Chr1 62551411 62555687 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ssu1g2201 BAH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2201 - - gmx:100788512 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2201 1 62551411 62555687 Ssu1g2201 1 62551411 62555687 ECH