Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2193 ATGGGTGGCAATGGCAAGCACAGGTGGAAAATCTCCTTCCACCGTTCATCCTCTCATTCCTCGAAGCTGGACCCGAAGCACCCTCCGAAGGAGTTCACTTGCCCGATTTCCGGGTCCCTAATGTCCGACCCGGTCGTCGTCGCTTCTGGCCAAACCTTCGAACGCGTCGCCGTTCAGGTCTGCAAGAACTTAAACTTCTCCCCGAAGCTCGACGACGGGACCCGACCCGATTTCTCCACCGTCATCCAGAACCTCGCCATCAAAACGACTATCCTCCACTGGTGCGACACGTCGCGCACCGAACACCCGCGCGCGCCGGATTACGCCTCCGTGGAGCGCCGAGTCAGGGACGCAATGGCGGCGTCGGAGGAAGAAGGCCGGGACCGCGGAATCAGGGTCTCGGAAAAGGAGCTTCTGAACGCGGTGGCGGACAACCCGCCGGTGATTTTCTCCCACGCCGCCACCGAGCTGGGGCCGCGAGTCAACCACTTCAACTCGGGATCGTCCTCGGAGGAATCGGTGATAATCCCGGCGAGTCCGGGAACGCCGCTGCCGTTGACGATTCGTCCGACGTGCTTCTcctcgtcgtcgtcgtcgtgcGAGATCGAAGTCGAAAACCCTAGCGCGCCGGCGTCGGAGGAGGAGGAGGGGATACTGAAGAAGCTGAAGAGCAGCGAGGTGTTCGAGCAAGAAGAAGGCGTAATCGCGCTTAGAAAGATCACGAGGAGCAAAGAGGAAGCTAGGGTTTCGCTCTGCACGCCGCGGCTTCTGCTGGCGCTGCGCGGTTTAATCGCGTCGCGGTACGGCGTCGTTCAGGTCAACGCGGTGGCGTCGCTGGTCAACCTCTCGCTGGAGAAGCGGAACAAGGTGAAGATCGTGAGGTCGGGGTTTGTTCCCTTCTTAATTGACGTGTTGAAGGGGGGATTGGGTGAGTCGCAGGAGCACGCTGCGGGCGCGCTTTTTAGTTTAGCGCTGGACGACGACAACAAAATGGCGATCGGCGTTCTCGGCGCGTTGCAGCCGCTGATGCACGCGCTGCGTGCCGAGTCCGAGCGGACTCGGCACGACTCGGCGCTGGCGCTGTACCATTTGAGTCTGGTTCAGAGCAACCGAGTCAAGCTGGTGAAACTCGGGGTGATTCCGACGCTGCTCTCGATGGTGGTGGCGGGGAACTTGGCGAGCCGGGTGCTGCTGATTCTGTGCAACCTCGCCGTGTGCACGGAGGGGCGCACGGCGATGCTGGACGCGAACGCGGTGGGGTGTTTGGTGGGGCTTTTGAGGGGGAACGAGTTGGACTCGGAGGCGACTCGGGAGAACTGCGTGGCGGCGTTGTACGCGTTGAGTCACAGGAGCTTGAGGTTCAAGGGGCTGGCCAAAGACGCCGGGGTGGTGGAGGTTTTGAAGGAGATTGAGGAAACGGGGACGGAGAGGGCCAGGGAGAAGGCGAGGAAGGTCTTGCACATGATGAGGACTGTGGGAGATGGAGACGGTGATGAGGGTGAGGAGTTTTTTGACTCGGCCGGGTTGACGCGGAATCGGTACCGAGTTGGTGCTGCTGCCAGGAATCACAACCTCGTCAACACGACAACGTTTTAG 1596 0.6009 MGGNGKHRWKISFHRSSSHSSKLDPKHPPKEFTCPISGSLMSDPVVVASGQTFERVAVQVCKNLNFSPKLDDGTRPDFSTVIQNLAIKTTILHWCDTSRTEHPRAPDYASVERRVRDAMAASEEEGRDRGIRVSEKELLNAVADNPPVIFSHAATELGPRVNHFNSGSSSEESVIIPASPGTPLPLTIRPTCFSSSSSSCEIEVENPSAPASEEEEGILKKLKSSEVFEQEEGVIALRKITRSKEEARVSLCTPRLLLALRGLIASRYGVVQVNAVASLVNLSLEKRNKVKIVRSGFVPFLIDVLKGGLGESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRAESERTRHDSALALYHLSLVQSNRVKLVKLGVIPTLLSMVVAGNLASRVLLILCNLAVCTEGRTAMLDANAVGCLVGLLRGNELDSEATRENCVAALYALSHRSLRFKGLAKDAGVVEVLKEIEETGTERAREKARKVLHMMRTVGDGDGDEGEEFFDSAGLTRNRYRVGAAARNHNLVNTTTF 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2193 531 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Ssu1g2193 531 Gene3D - 394 493 IPR011989 -
Ssu1g2193 531 Gene3D - 214 393 IPR011989 -
Ssu1g2193 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 107 IPR013083 -
Ssu1g2193 531 PANTHER U BOX DOMAIN-CONTAINING 1 522 - -
Ssu1g2193 531 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 522 - -
Ssu1g2193 531 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Ssu1g2193 531 SUPERFAMILY ARM repeat 218 489 IPR016024 -
Ssu1g2193 531 CDD RING-Ubox 34 81 - -
Ssu1g2193 531 MobiDBLite consensus disorder prediction 1 31 - -
Ssu1g2193 531 Pfam U-box domain 29 97 IPR003613 GO:0004842|GO:0016567
Ssu1g2193 531 Pfam Armadillo/beta-catenin-like repeat 326 365 IPR000225 GO:0005515
Ssu1g2193 531 SMART arm_5 406 449 IPR000225 GO:0005515
Ssu1g2193 531 SMART arm_5 326 366 IPR000225 GO:0005515
Ssu1g2193 531 SMART arm_5 285 325 IPR000225 GO:0005515
Ssu1g2193 531 SUPERFAMILY RING/U-box 15 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2193 Ssu-Chr1 62355174 62356769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2193 1 521 U-box Gene Family AT5G65200 58.333 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2193 - - gmx:100784564 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2193 1 62355174 62356769 Ssu1g2193 1 62355174 62356769 ECH