Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2184 ATGTCTTCCTTGTCAACGCACCACACCTATAGCCGAAAGCAGAAATCTCTCGGCCTTTTATGCACTAATTTTTTGAGCTTATACAACAAAGAAGACGTGCGCTTAATCGGTCTCGATGACGCTGCTTCACGATTAGGGGTTGAACGGCGACGGATCTATGACATCGTTAACGTCTTGGAGAGTGTCGGGGTGCTTGCGAGAAAAGCTAAGAATCAGTATACATGGAAAGGGTTTTCTGCAATTCCTGCGGCTTTGCAAGAACTCAAGGATGAAGGTTTGAAGGAGAATCCGGGATCTTTTGATGACTCCAATGACAGTGCAAAAGTGTCTGATGACGAGGACGAGGAAGAAACATTTCCGAATCCTACTACTGAAAGTCAGAATGACACGGCAAATCCTGATTCCTCCGCTCCTGTCAAATCCTCCAAgaatgAAAACAGAAGGGAAAAATCCCTGGCACTGCTTACTCAGAATTTTGTCAAGCTTTTTGTCTGCTCTAATATTGAAATGATCTCCCTTGACGAAGCAGCGAAGTTGTTGCTTGGGAATGCCCACAATACATCAACAATGAGAACAAAAGTCAGACGCCTATATGATATTGCAAATGTGCTATCCTCCATGAACCTAATCGAGAAGACCCATACAACAAACACAAGAAAACCAGCATTCAGGTGGCTGGGTTTGAGAGGGAAAACATGGAGTGGATCAGTTGACTTAGCTCACAATTCAAATAACGAGTCAGGGAAAAGGATGTTTGGAAATGATATCACAAACATAAGCTTTAAAAGGAACAAAGTTGATTTGTTCATGGATGGCCCGAACTCTAAAATGCAAAGCCAACAGGAAAATGTTAGTTATGGAGCTCAGGCAGAGAAAAACAACGGAGCTCAGCCAGAGAAAAGCCACTTAAAAAAGGATGCAAAACAGACTTCAAAGAGCTATCAGTTTGGCCCTTTCGCTCCAGCTTATGTGCCCAAAGTTGGAACCTCTGAAAACAATAGTGTGAAACAGGTGCATGATTGGGACAGCCTCGCACAGATGCATCGTCCTCAGTATCAAAACAAAGCTTTGGGAGATCTCTTTTCTCACTTCACGGAGGCATGGAAATCTTGGTACTTTGAAGTTGTCGGGAAAAAGTCAACATAA 1146 0.4302 MSSLSTHHTYSRKQKSLGLLCTNFLSLYNKEDVRLIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFSAIPAALQELKDEGLKENPGSFDDSNDSAKVSDDEDEEETFPNPTTESQNDTANPDSSAPVKSSKNENRREKSLALLTQNFVKLFVCSNIEMISLDEAAKLLLGNAHNTSTMRTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGLRGKTWSGSVDLAHNSNNESGKRMFGNDITNISFKRNKVDLFMDGPNSKMQSQQENVSYGAQAEKNNGAQPEKSHLKKDAKQTSKSYQFGPFAPAYVPKVGTSENNSVKQVHDWDSLAQMHRPQYQNKALGDLFSHFTEAWKSWYFEVVGKKST 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2184 381 MobiDBLite consensus disorder prediction 121 140 - -
Ssu1g2184 381 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 5 374 - -
Ssu1g2184 381 MobiDBLite consensus disorder prediction 272 311 - -
Ssu1g2184 381 SMART E2F_TDP_2 147 227 IPR003316 GO:0005667|GO:0006355
Ssu1g2184 381 SMART E2F_TDP_2 12 77 IPR003316 GO:0005667|GO:0006355
Ssu1g2184 381 Pfam E2F/DP family winged-helix DNA-binding domain 149 227 IPR003316 GO:0005667|GO:0006355
Ssu1g2184 381 Pfam E2F/DP family winged-helix DNA-binding domain 13 77 IPR003316 GO:0005667|GO:0006355
Ssu1g2184 381 MobiDBLite consensus disorder prediction 93 147 - -
Ssu1g2184 381 SUPERFAMILY "Winged helix" DNA-binding domain 11 75 IPR036390 -
Ssu1g2184 381 MobiDBLite consensus disorder prediction 273 296 - -
Ssu1g2184 381 PANTHER TRANSCRIPTION FACTOR E2F 5 374 IPR015633 GO:0000978|GO:0006357
Ssu1g2184 381 SUPERFAMILY "Winged helix" DNA-binding domain 149 228 IPR036390 -
Ssu1g2184 381 Gene3D - 7 79 IPR036388 -
Ssu1g2184 381 Gene3D - 141 229 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2184 Ssu-Chr1 62158919 62167677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2184 3 376 E2F-DP Transcription Factor Family AT3G48160 56.364 9.02e-130 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Ssu1g2184 E2F_TDP 3.6e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2184 K09391 - gmx:100818090 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2184 1 62158919 62167677 Ssu1g2184 1 62158919 62167677 ECH
Ssu6g1328 6 21709295 21714268 Ssu1g2184 1 62158919 62167677 PCT